Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007832.1 Kokia drynarioides strain JFW-HI SEQ_122468, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1797
ACGTcount: A:0.34, C:0.18, G:0.11, T:0.37


Found at i:301 original size:84 final size:84

Alignment explanation


    Indices: 155--312  Score: 253
    Period size: 84  Copynumber: 1.9  Consensus size: 84

        145 TGTACAGATA

                       *  *       *                                         *
        155 CCGTATCGATGGCTGAGATACCGCATATGTTACGAGTCCTCGTCAGCTTAGTGTGAGCAGCATCG
          1 CCGTATCGATGACTAAGATACCACATATGTTACGAGTCCTCGTCAGCTTAGTGTGAGCAGCATCA

                *              
        220 TATATTTGTAACAATTATG
         66 TATAATTGTAACAATTATG

                             *                                       *       
        239 CCGTATCGATGACTAAGGTACCACATATGTTACGAGTCCTCGTCAGCTTAGTGTGAGTAGCATCA
          1 CCGTATCGATGACTAAGATACCACATATGTTACGAGTCCTCGTCAGCTTAGTGTGAGCAGCATCA

                     
        304 TATAATTGT
         66 TATAATTGT

        313 TACTATCATC


Statistics
Matches: 67,  Mismatches: 7, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  84   67  1.00

ACGTcount: A:0.26, C:0.20, G:0.23, T:0.31


Consensus pattern (84 bp):   
CCGTATCGATGACTAAGATACCACATATGTTACGAGTCCTCGTCAGCTTAGTGTGAGCAGCATCA
TATAATTGTAACAATTATG
Done.