genome.fa.s7835.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01007835.1 Kokia drynarioides strain JFW-HI SEQ_122471, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  165101

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2209--2485	49	5.6	50	71	14	182	16	23	20	39	1.92
2096--2529	96	4.4	97	82	6	484	16	22	21	39	1.92
8118--8181	23	2.9	21	70	23	51	57	0	3	39	1.14
11779--11803	6	4.2	6	100	0	50	16	0	52	32	1.44
15637--15673	13	2.5	15	87	12	51	43	0	5	51	1.24
16018--16140	20	6.5	20	72	18	95	47	3	10	39	1.54
16084--16148	20	2.7	26	73	26	88	47	0	10	41	1.38
17930--17962	14	2.3	15	94	5	59	51	0	0	48	1.00
21487--21526	19	2.1	19	85	0	53	50	5	0	45	1.23
21501--21579	27	2.9	27	76	3	77	62	5	1	31	1.25
23625--23673	14	3.4	14	75	10	53	40	0	6	53	1.26
25596--25637	11	3.8	11	93	0	75	61	0	7	30	1.22
25588--25636	22	2.2	22	85	0	71	65	2	6	26	1.27
28365--28421	28	2.0	28	89	0	87	35	17	26	21	1.95
35533--35577	23	2.0	22	86	4	63	48	0	4	46	1.22
35615--35700	43	2.0	43	100	0	172	25	13	18	41	1.88
38469--38495	9	3.0	9	100	0	54	22	33	11	33	1.89
40650--40717	18	3.8	18	69	14	52	48	5	2	42	1.42
40691--40717	6	4.5	6	100	0	54	51	0	0	48	1.00
42130--42239	57	1.9	56	87	5	159	34	10	5	49	1.61
42284--42324	22	2.0	20	86	13	57	48	4	7	39	1.52
45661--45690	2	15.0	2	100	0	60	0	50	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45964--46011	22	2.2	22	85	7	62	68	12	6	12	1.37
47190--47247	12	4.7	12	73	4	53	39	10	15	34	1.81
50989--51053	31	2.3	27	77	15	67	41	12	9	36	1.75
64238--64278	7	6.0	7	91	2	66	14	26	0	58	1.37
73613--73657	19	2.4	19	81	7	56	37	0	2	60	1.09
74423--74461	16	2.4	16	80	12	53	12	5	2	79	1.00
78557--78586	8	3.8	8	95	0	51	43	0	0	56	0.99
82200--82297	18	5.7	16	71	15	54	64	0	6	29	1.18
82216--82276	20	3.1	19	77	17	63	60	0	4	34	1.18
82221--82282	18	3.3	18	79	16	65	59	0	4	35	1.19
82203--82338	71	1.9	72	83	7	179	60	0	6	32	1.28
84822--84884	31	2.0	31	90	0	99	41	6	4	47	1.50
91765--91807	15	2.9	15	75	0	50	34	0	0	65	0.93
92136--92328	96	2.0	96	98	0	377	44	16	11	27	1.82
100170--100234	31	2.1	31	88	0	94	21	13	13	50	1.76
109802--109997	39	5.0	39	91	2	304	23	14	33	28	1.94
111140--111200	26	2.4	26	91	5	99	39	6	21	32	1.79
116792--116833	22	2.0	21	86	13	59	45	4	2	47	1.36
118789--119027	108	2.2	108	82	5	286	33	12	22	31	1.91
121456--121486	2	15.5	2	100	0	62	0	48	0	51	1.00
129149--129194	23	2.0	24	95	4	85	67	21	2	8	1.29
129130--129203	20	3.5	20	79	16	78	68	18	1	10	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
129191--129245	21	2.6	21	75	11	58	70	14	7	7	1.31
134530--134591	6	10.2	6	89	3	61	56	0	41	1	1.09
134530--134591	12	5.1	12	86	3	70	56	0	41	1	1.09
138836--138886	24	2.2	23	82	3	57	50	13	5	29	1.65
140099--140183	14	5.5	14	70	20	53	25	5	3	64	1.32
140096--140203	32	3.3	32	89	3	155	26	5	5	62	1.40
140125--140177	16	3.3	16	75	19	65	26	5	3	64	1.33
147910--147944	16	2.2	16	89	0	52	71	0	2	25	1.00
154054--154084	5	6.2	5	100	0	62	0	19	0	80	0.71
155089--155141	23	2.2	23	80	6	61	9	3	28	58	1.47
155326--155364	20	2.0	20	89	0	60	25	2	7	64	1.33
155865--155889	13	1.9	13	100	0	50	16	12	24	48	1.79
157703--157812	56	2.0	56	83	3	141	32	8	15	43	1.76
158677--158725	17	2.7	19	76	20	59	55	0	2	42	1.11
161606--161637	3	10.7	3	100	0	64	34	0	0	65	0.93
162350--162374	8	3.1	8	100	0	50	48	0	0	52	1.00
164971--165024	18	3.0	18	77	0	72	20	0	59	20	1.38
164971--165041	36	2.0	35	83	10	90	18	2	56	22	1.54

Tables:   1

The End!