Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007837.1 Kokia drynarioides strain JFW-HI SEQ_122473, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10489
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33


Found at i:6252 original size:25 final size:25

Alignment explanation


    Indices: 6224--6274  Score: 102
    Period size: 25  Copynumber: 2.0  Consensus size: 25

       6214 TCAAACCCTG

                                     
       6224 TACGTTGGTTTGATGGTCAAGGTGT
          1 TACGTTGGTTTGATGGTCAAGGTGT

                                     
       6249 TACGTTGGTTTGATGGTCAAGGTGT
          1 TACGTTGGTTTGATGGTCAAGGTGT

             
       6274 T
          1 T

       6275 CATCATCTTA


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   26  1.00

ACGTcount: A:0.16, C:0.08, G:0.35, T:0.41


Consensus pattern (25 bp):   
TACGTTGGTTTGATGGTCAAGGTGT

Found at i:7634 original size:31 final size:30

Alignment explanation


    Indices: 7587--7661  Score: 89
    Period size: 31  Copynumber: 2.4  Consensus size: 30

       7577 GGGTCTAACT

                                            
       7587 AAAATTTTCAAAAACTTT-ACAAGATTTAATG
          1 AAAATTTT-AAAAACTTTGA-AAGATTTAATG

             *                     *      *
       7618 AGAATGTTTAAAAACTTTGAAAGGTTTAATT
          1 AAAAT-TTTAAAAACTTTGAAAGATTTAATG

                         
       7649 AAAATTTTAAAAA
          1 AAAATTTTAAAAA

       7662 GTTTTAGAGG


Statistics
Matches: 38,  Mismatches: 4, Indels: 5
        0.81            0.09        0.11

Matches are distributed among these distances:
  30    8  0.21
  31   26  0.68
  32    4  0.11

ACGTcount: A:0.49, C:0.05, G:0.09, T:0.36


Consensus pattern (30 bp):   
AAAATTTTAAAAACTTTGAAAGATTTAATG
Done.