Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01000785.1 Kokia drynarioides strain JFW-HI SEQ_111853, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 27882
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.37
Found at i:2517 original size:18 final size:18
Alignment explanation
Indices: 2491--2538 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 18
2481 AAAAATAAAA
* *
2491 ATAAAATAATAAGAGCTG
1 ATAATATAATAAGAGCTC
*
2509 ATAATATAATATTGAGCTC
1 ATAATATAATA-AGAGCTC
2528 AT-ATATAATAA
1 ATAATATAATAA
2539 AAAATAAACC
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
18 18 0.72
19 7 0.28
ACGTcount: A:0.52, C:0.06, G:0.10, T:0.31
Consensus pattern (18 bp):
ATAATATAATAAGAGCTC
Found at i:3503 original size:215 final size:215
Alignment explanation
Indices: 3126--8102 Score: 4624
Period size: 216 Copynumber: 23.2 Consensus size: 215
3116 GTATCACAAC
* * * * * *
3126 CATTTACGAGTTCTTTTATAGCATCGATTCCT-ATGAGTTTTCAAGGCGATCCATTCCTT-GACC
1 CATTTACGAGTTCTTTTATAACTTTGGTTCCTGA-GAGTATTCAAGACGATCCATTCCTTCGACC
* * * * * * *
3189 AA-TTTTCTAAAAATTCCATGATCGGGAAGTTGCATCATTTGGTCTAAATAGTTTGTCATTGTGG
65 AATTTTTC-AAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGT
* * * * *
3253 AAATAACATTTGGTCTTTGAATTAAAAACTTATTTACGTGGGAATTGTTTCACTCTTGCTCTTTG
129 AAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTCTTGG
* * *
3318 ATGAACTTCAGAACTTTTCAAA
194 ACGAACTTCTGAACTTGTCAAA
** * * * *
3340 TTTTTATGAGTTCTTTTATAACTTTGGGTCCTGAGAGAATTTAAGACGATCCATTCCTTCGACCA
1 CATTTACGAGTTCTTTTATAACTTTGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCA
* * * * *
3405 ATTTTCCAAATATTCCATGCTCAGGAAATCACATC-TATTGGTCTAAAAAGTTTTTCATTTTGTA
66 ATTTTTCAAACATTCCATGCTCGGGAAATCGCATCAT-TTGGTCTAAAAAGTTTGTCATTTTGTA
* * * * **
3469 AACAACTTTTGGTCTATGAATTAAAAACTTATTTACATGAGAATTGTTTTTCTCTTGGTTCTTAA
130 AACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT-GCTCTTGG
* *
3534 ACGAACTTCTGAACCTGTGAAA
194 ACGAACTTCTGAACTTGTCAAA
* * * * * * *
3556 TATTTATGAGTTCTTTTATAACTTAT-GTTCCTGAGAGTATTTAAGACGATTCATTACTTCAATC
1 CATTTACGAGTTCTTTTATAACTT-TGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACC
* * * * * *
3620 AATTTTTCGAACATTCCATTCTCGGGAAGTCGCATCACTTGATTTAAAAAGTTTGTCATTTTGTA
65 AATTTTTCAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTA
* ** * * * * *
3685 AACAACTTTTGGTCTTTAAATTAAAATTTTATTCACATGAGAATTTTTTCTCTCTTGGTTCTTTG
130 AACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT-GCTCTTGG
* * *
3750 ACGAATTTTTGAACTCGTCAAA
194 ACGAACTTCTGAACTTGTCAAA
* * * * * * *
3772 CTTTTACGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGATGATCCCTTCCTTCGAGCA
1 CATTTACGAGTTCTTTTATAACTTTGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCA
** * * *
3837 ATTTTTTGAACATTCCATGCTTCGGG-TATCGTATCATTTGGTTTAAAAAGTTTGTCATTTTGTA
66 ATTTTTCAAACATTCCATGC-TCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTA
* * * * *
3901 AACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAGTTATTTTTCTCTTTCTTCTTAG
130 AACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGC-TCTTGG
* * *
3966 ATGAAATT-TCGAACTCGTCAAA
194 ACGAACTTCT-GAACTTGTCAAA
* * * * *
3988 CATTTATGAGTTCTTTTATAACATCGGTTCCT-ATGAGTATTCAAGATGATCCATTCCTTCAACC
1 CATTTACGAGTTCTTTTATAACTTTGGTTCCTGA-GAGTATTCAAGACGATCCATTCCTTCGACC
** * * * * * * * **
4052 AATTTTTCGTAGATTCCATGATCGAGAAATCGCATCATTTCGTCTTAATAGTTTGT-GTTTTGGG
65 AATTTTTCAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTA
* * **
4116 AACAACTTTTGGTCATTGAATTTAAAACTTATTTACGTGAGAGCTGTTTCTCTCTTGCTTCTTGG
130 AACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGC-TCTTGG
* *
4181 ACGAAATTCTGAACATT-TCAAG
194 ACGAACTTCTGAAC-TTGTCAAA
* * ** * * *
4203 CATTTACGAGTTCTTTTATAGCATCAGTTCCT-ATGAGTTTTCAAGACGATCCATTCCTTCAAAC
1 CATTTACGAGTTCTTTTATAACTTTGGTTCCTGA-GAGTATTCAAGACGATCCATTCCTTCGACC
* * * * *
4267 AATTTTTCGAAA-ATTCCATGATCGGGAAGTCGCATCATTTGGTCTAAATAGTTTGTCATTATGG
65 AATTTTTC-AAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGT
* * * * *
4331 AAATAACTTTTGGTTTTTGAAATAAAAACTTATTTACGTGGGAATTGTTTCACTCTTGCTCTTGG
129 AAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTCTTGG
* *
4396 ATGAACTTCCGAACATT-TCAAA
194 ACGAACTTCTGAAC-TTGTCAAA
** ** ** * * *
4418 TTTTTATTAGTTCTTTTATAACTTTGGTTTTTGAGAGTATTTAAGATGATTCATTCCTTCGACCA
1 CATTTACGAGTTCTTTTATAACTTTGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCA
** * * * *
4483 ATTTTTTTAATATTCCATGATCGGGAAATCACAT-ATTTTGGTCTAAAAAGTTTTTCATTTTGTA
66 ATTTTTCAAACATTCCATGCTCGGGAAATCGCATCA-TTTGGTCTAAAAAGTTTGTCATTTTGTA
* * * *
4547 AACAACTTCTGGT-TTATGAATTAAAAACATATTTACATGAGAATTGTTTCTCTCTTGGCTCTTA
130 AACAACTTTTGGTCTT-TGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT-GCTCTTG
* * *
4611 AACGAACTTCTGAACCTGTGAAA
193 GACGAACTTCTGAACTTGTCAAA
* * * * * *
4634 CATTTATGAGTTTTTTTATAACTTCT-ATTCCTGAGAGTATTCAAGACGATTCATTCCTTCAATC
1 CATTTACGAGTTCTTTTATAACTT-TGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACC
** * * * * * * *
4698 AATTTTTTGAACATTCCATTCTCTGTAAGTCGCATCATTTGGTCTTAATAGTTTGTCATTTTGGA
65 AATTTTTCAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTA
* *
4763 AACAACTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAGTTGTTTCTCTCTTGCTTCTTGG
130 AACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGC-TCTTGG
* * ** *
4828 ACAAAATTCCAAACATGTCAAA
194 ACGAACTTCTGAACTTGTCAAA
* * * * * * *
4850 CATTTACAAGTTCTTTTATAACATCGGTTCCTGTGAGTTTTCAAGATGATCTATTCCTTCGACCA
1 CATTTACGAGTTCTTTTATAACTTTGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCA
* * * * * * * * * * * *
4915 ATTTTTCAAAAAATCCATGATCGGGAAATTGCACCTTTTGTTCTTAATAGTTTGACATTGTGTAT
66 ATTTTTCAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAA
* * * *
4980 ATAACTTTTGATCTTTGAATTAAAAACTTATTTACGTGGGAATTGTTTCTCTCTTGCTCTTGGAT
131 ACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTCTTGGAC
* *
5045 GAACTTCCT-AACTTTTAAAA
196 GAACTT-CTGAACTTGTCAAA
** ** * * *
5065 TTTTTACGAGTTCTTTTATAACTTCAGTTCCTAAGAGTATTTAAGATGATCCATTCCTTCGACCA
1 CATTTACGAGTTCTTTTATAACTTTGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCA
* * * *
5130 A-TTTTCTGAACATTCCATGCTCGAGAAATAGCATCATTTGGTCTAAAAAGTTTTTCATTTTGTA
66 ATTTTTC-AAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTA
* * * *
5194 AACAACTTTTGGT-TTATAAATTAAAAACTTATTTACGTGAGAATTGTTTCTTTCTTGGTTCTTA
130 AACAACTTTTGGTCTT-TGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT-GCTCTTG
* * * * * *
5258 AATGAACTTCCGAGCCTGTGAAA
193 GACGAACTTCTGAACTTGTCAAA
* * * * * *
5281 CATTTACGAGTTCGTTTATAACTTTTGTTCCTGAGAGTATTCAAGATGATCCATTCCATCAATCA
1 CATTTACGAGTTCTTTTATAACTTTGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCA
* * * *
5346 ATTTTTCGAACATTCCATTCTCTGGAAGTCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAA
66 ATTTTTCAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAA
* * * * *
5411 ACAACTTTTGTTCTTTAAATTAAAAACTTATTTACGTGAGAATTCTTTCTCTCTTGGTTCTTTGA
131 ACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT-GCTCTTGGA
* * *
5476 CGAAATTTTGAA-TTCATCAAA
195 CGAACTTCTGAACTT-GTCAAA
* * * * * * * *
5497 CTTTTACGAGTTCTTTTATAACTTCGATTCTTTAAAGTATTCAAGACGATCCCTTCCTTCGAGCA
1 CATTTACGAGTTCTTTTATAACTTTGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCA
* * * * *
5562 ATTTTTCAAA-AATCCATGGTTCGGG-TATCGCATCATTTGGTCTAAAAAGTTTGTTATTTTGTT
66 ATTTTTCAAACATTCCAT-GCTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTA
* *
5625 GACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAGTTGTTTCTCT-TT-CTTCTTGG
130 AACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGC-TCTTGG
* * *
5688 ACGAAATTCCGAACTCGTCAAA
194 ACGAACTTCTGAACTTGTCAAA
* * * * * * * * * *
5710 CGTTTACGAGTTCTTTTATAACATCGGTTCTTGTGAATATTTAAGATGATCCATTCCTTCAACTA
1 CATTTACGAGTTCTTTTATAACTTTGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCA
* * ** ** ** * ** * * * *
5775 GTTTTCCGTACATTCCATTATCAAGAAATCACATCATTTCATCTTAATAGTTTCTCATTTTGGAA
66 ATTTTTCAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAA
* * * * ** **
5840 AGAACTTTTGGTCCTTGAATTAAAAAAACTTATTTATGTGGGAATTGTTTCTCTCTTATTCTTAA
131 ACAACTTTTGGTCTTTGAATT--AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTCTTGG
*
5905 ACGAACTTCTAAACTTGTCAAA
194 ACGAACTTCTGAACTTGTCAAA
* * *
5927 CCTTTACGAGTTCTTTTATAACTTCT-GTTCCTGAGAGTATTCAAGATGATCCATTCCTTTGACC
1 CATTTACGAGTTCTTTTATAACTT-TGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACC
* * ** * *
5991 AATTTTTCGAAA-ATACCATGATCGGGAAATCAAATCATTTGGTCTAAATAGTTTGTTC-TTGTG
65 AATTTTTC-AAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTG-TCATTTTG
* ** * *
6054 GAAATTA-TTTTGGTCTTTAAATTAAAAACTTATTTATGTGAGAATTGTTTCTC-CTTTGCTCTT
128 TAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTC-TTGCTCTT
* *
6117 GGCCGAACTT-TCGAACTTTTCAAA
192 GGACGAACTTCT-GAACTTGTCAAA
*** * * * * * * *
6141 -AAAGACGAGTTCTTATATAACTTCGGTTCCTAAGGGTATTCAAGATGATCCATTCCCTCAACCA
1 CATTTACGAGTTCTTTTATAACTTTGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCA
* * * *
6205 ATTTTTCGAAC-TTCCCATGCTTGGGAAATCGTATCATTTGGAC-AAAATAGTTTGTCATTTTGT
66 ATTTTTCAAACATT-CCATGCTCGGGAAATCGCATCATTTGGTCTAAAA-AGTTTGTCATTTTGT
* * *
6268 AAACAACTTTTGGTCTTTAAATT-AAAACTTATTTACGTTAGAGTTGTTTCTCTCTTGCTTCTTG
129 AAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGC-TCTTG
* * ** *
6332 GATGAAATTCCAAACATGTCAAA
193 GACGAACTTCTGAACTTGTCAAA
* * * * * *
6355 CATTTACGAGTTCTTTTATAA-TATCGATTCCTGTGAGTTTTCAAGACGATCCAATCCTTCGACT
1 CATTTACGAGTTCTTTTATAACT-TTGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACC
* * * * *
6419 AATTTTTCGAAA-ATTCCATGATCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTGTGG
65 AATTTTTC-AAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGT
* * * * *
6483 AAATAACTTTTGGTCTATGAATTAAAAAATTATTTACGTGGGAATTGTTTCTCTCTTGCTATTGG
129 AAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTCTTGG
* * *
6548 ATGAACTT-TCGAACTTTTTAAA
194 ACGAACTTCT-GAACTTGTCAAA
** * * * *
6570 TTTTTACGAGTCCTTTTAGAACTTCGGTTCCTAAGAGTATTCAAGACGATCCATTCCTTCGACCA
1 CATTTACGAGTTCTTTTATAACTTTGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCA
* * * ** * * * *
6635 ATTTTCCGAATATTCCATGCTCGAAAAATCGAATCATTAGGTCCAAAAAAATTT-TCATTTTGTA
66 ATTTTTCAAACATTCCATGCTCGGGAAATCGCATCATTTGGT-CTAAAAAGTTTGTCATTTTGTA
* * * * * * * **
6699 AACAACTTTTGGTCTATGAACTAAAAACTTATTTACATGAGAATTATTTCTCCCTTGGTTTTTAA
130 AACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT-GCTCTTGG
* * *
6764 ACGAACTTCCGAACCT-ACGAAA
194 ACGAACTTCTGAACTTGTC-AAA
* *
6786 CATTTACGGGTTCTTTTATAACTTCT-GTTCCTAAGAGTATTC-A-A-GA--CA-T-C--CG---
1 CATTTACGAGTTCTTTTATAACTT-TGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACC
* * * *
6838 ---------AACATTCCATTCTCAGGAAGTCACATCATTTGGTCTAAAAAGTTTGTCATTTTGTA
65 AATTTTTCAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTA
* * * * * * *
6894 AACAGCTTTTTGACTTTGAATTAAAAACTTATTTACGTGAGAATTTTTTCTGTCTTGGTTCTTTG
130 AACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT-GCTCTTGG
*
6959 ACGAA-TTTTGAACTTGTCAAA
194 ACGAACTTCTGAACTTGTCAAA
* * * * * * * * * *
6980 CTTTTACGAATTCTTTTATAACTTCGATTCCTTAAAGTATACAAGATGATCCCTTCCTTCGAGCA
1 CATTTACGAGTTCTTTTATAACTTTGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCA
* * * * *
7045 ATTTTTCGAACATTCCATGCTTCTGG-TATCGCATCATTTAGTTTAAAAAGTTTGTCATTTTGTA
66 ATTTTTCAAACATTCCATGC-TCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTA
* * *
7109 AACAACTTTTGGTCTTTGAATTAAAAACTTGTTTACGTGAGAGTTGTTTCTCTCTTTCTTCTTGG
130 AACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGC-TCTTGG
* *
7174 ACGAAATTTTGAACTTGTCAAA
194 ACGAACTTCTGAACTTGTCAAA
* * * * * *
7196 CATTTACAAGTTCTTTTATAACATTGGTTCCT-ATGAGTATTCAAGATGATCCTTTCCTTCAACT
1 CATTTACGAGTTCTTTTATAACTTTGGTTCCTGA-GAGTATTCAAGACGATCCATTCCTTCGACC
* * * * *
7260 AATTTTTCGAACATTCCATGAC-CGCGAAATCGCATCATTTGGTCTTAATAGTTTGTCATTTTGG
65 AATTTTTCAAACATTCCATG-CTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGT
* * * * *
7324 AAACAACTTTTGGTCCTTAAATTAAAAACTTATTTAGGTG-GAACTTGTTTCTCTCTTGTTCTTA
129 AAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAA-TTGTTTCTCTCTTGCTCTTG
*
7388 GACGAACTTCCGAACTTGTCAAA
193 GACGAACTTCTGAACTTGTCAAA
* *
7411 -ACTTTACGAGTTCTTTTATAACTTTGATTCCTGAGAGTATTCAAGACGATCCATTCCTTCAACC
1 CA-TTTACGAGTTCTTTTATAACTTTGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACC
* * *
7475 AATTTTTCAAACATTCCGTGCTCGGGAAATCGTATCATTTGGACTAAAAAGTTTGTCATTTTGTA
65 AATTTTTCAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTA
* * *
7540 AACAAATTTTGGTCTTTGAATTAAAAACTTATTTGCGTGAGAGTTGTTTCTCTCTTGCTTCTTGG
130 AACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGC-TCTTGG
* * * * *
7605 ATGAAATTCCGTACATGTCAAA
194 ACGAACTTCTGAACTTGTCAAA
* * * * * * *
7627 CATTTATGAGTTCTTTTATAACATTGGTTCCTGTGAGTTTTAAAAACGATCCATTCCTTCAACCA
1 CATTTACGAGTTCTTTTATAACTTTGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACC-
* * * * * *
7692 AATTTTTGAAA-ATTTCATGATCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTGTGGA
65 AATTTTTCAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTA
* * * * ***
7756 AATAACATTTGGTCTTTGTATTAGAAACTTATTTACGTG-GAATTGTTTCTCTCTTGAAATTGGA
130 AACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTCTTGGA
* * *
7820 TGAACTTTTGAACTTTTCAAA
195 CGAACTTCTGAACTTGTCAAA
** *
7841 TTTTTACGAGTTCTTTTATAAC-TTCGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCA
1 CATTTACGAGTTCTTTTATAACTTTGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCA
* * * *
7905 ATTTTCCAAACATTCCATGCTCGGGAAAATCGCATCATTTGGTCTAAACAGTTTTTCATTTTGGA
66 ATTTTTCAAACATTCCATGCTCGGG-AAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTA
** * * * * **
7970 AACAACTTTTGGTCTACGAATTAAAAACTTATTTATGTGAGAATTGTTTCTCT-TGGTTATTAAA
130 AACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTCTTGGA
* ** * * *
8034 TGAACTTCCAAACCTGTGAAG
195 CGAACTTCTGAACTTGTCAAA
* * ** *
8055 CATTTACAAGTTCATTTATAACTTTTATTCTTGAGAGTATTCAAGACG
1 CATTTACGAGTTCTTTTATAACTTTGGTTCCTGAGAGTATTCAAGACG
8103 TCCGAACATT
Statistics
Matches: 3891, Mismatches: 757, Indels: 229
0.80 0.16 0.05
Matches are distributed among these distances:
194 52 0.01
195 95 0.02
196 1 0.00
197 2 0.00
199 1 0.00
200 1 0.00
201 1 0.00
203 2 0.00
207 2 0.00
209 1 0.00
210 1 0.00
211 2 0.00
212 17 0.00
213 260 0.07
214 354 0.09
215 1334 0.34
216 1608 0.41
217 154 0.04
218 3 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.40
Consensus pattern (215 bp):
CATTTACGAGTTCTTTTATAACTTTGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCA
ATTTTTCAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAA
ACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTCTTGGAC
GAACTTCTGAACTTGTCAAA
Found at i:4359 original size:431 final size:432
Alignment explanation
Indices: 3126--8518 Score: 4483
Period size: 431 Copynumber: 12.6 Consensus size: 432
3116 GTATCACAAC
* * * * ** *
3126 CATTTACGAGTTCTTTTATAGCATCGATTCCTATGAGTTTTCAAGGCGATCCATTCCTT-GACCA
1 CATTTACGAGTTCTTTTATAACTTCGGTTCCTATGAGTATTCAAGATGATCCATTCCTTCAACCA
* * * * *
3190 A-TTTTCTAAAAATTCCATGATCGGGAAGTTGCATCATTTGGTCTAAATAGTTTGTCATTGTGGA
66 ATTTTTC-GAACATTCCATGATCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGGA
* * * * *
3254 AATAACATTTGGTCTTTGAATTAAAAACTTATTTACGTGGGAATTGTTTCACTCTTGC-TCTTTG
130 AACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGG
* * * * * ** * * *
3318 ATGAACTTCAGAACTTTTCAAATTTTTATGAGTTCTTTTATAACTTTGGGTCCTGA-GAGAATTT
195 ACGAACTTCTGAACATTTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCT-ATGAGTATTC
* * * *
3382 AAGACGATCCATTCCTTCGACCAA-TTTTCCAAATATTCCATGCTCAGGAAATCACATC-TATTG
259 AAGACGATCCATTCCTTCGACCAATTTTTCGAAA-ATTCCATGATCGGGAAATCGCATCAT-TTG
* * * *
3445 GTCTAAAAAGTTTTTCATTTTGTAAACAACTTTTGGTCTATGAATTAAAAACTTATTTACATGAG
322 GTCTAAAAAGTTTGTCATTTTGGAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAG
* * ** * * *
3510 AATTGTTTTTCTCTTGGTTCTTAAACGAACTTCTGAAC-CTGTGAAA
387 AATTGTTTCTCTCTTGCTTCTTGGACGAAATTCCGAACTC-GTCAAA
* * ** * * * * *
3556 TATTTATGAGTTCTTTTATAACTTATGTTCCTGA-GAGTATTTAAGACGATTCATTACTTCAATC
1 CATTTACGAGTTCTTTTATAACTTCGGTTCCT-ATGAGTATTCAAGATGATCCATTCCTTCAACC
** * * * * * *
3620 AATTTTTCGAACATTCCATTCTCGGGAAGTCGCATCACTTGATTTAAAAAGTTTGTCATTTTGTA
65 AATTTTTCGAACATTCCATGATCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGGA
* ** * * * * *
3685 AACAACTTTTGGTCTTTAAATTAAAATTTTATTCACATGAGAATTTTTTCTCTCTTGGTTCTTTG
130 AACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGG
* * * * *
3750 ACGAATTTTTGAAC-TCGTCAAACTTTTACGAGTTCTTTTATAACTT-TGATTCCT-TAAAGTAT
195 ACGAACTTCTGAACAT-TTCAAACTTTTACGAGTTCTTTTATAACTTCAG-TTCCTAT-GAGTAT
* * * * * * * *
3812 TCAAGATGATCCCTTCCTTCGAGCAATTTTTTGAACATTCCATGCTTCGGG-TATCGTATCATTT
257 TCAAGACGATCCATTCCTTCGACCAATTTTTCGAAAATTCCATG-ATCGGGAAATCGCATCATTT
* *
3876 GGTTTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGA
321 GGTCTAAAAAGTTTGTCATTTTGGAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGA
* * * * * * *
3941 GAGTTATTTTTCTCTTTCTTCTTAGATGAAATTTCGAACTCGTCAAA
386 GAATTGTTTCTCTCTTGCTTCTTGGACGAAATTCCGAACTCGTCAAA
* *
3988 CATTTATGAGTTCTTTTATAACATCGGTTCCTATGAGTATTCAAGATGATCCATTCCTTCAACCA
1 CATTTACGAGTTCTTTTATAACTTCGGTTCCTATGAGTATTCAAGATGATCCATTCCTTCAACCA
* * * * * * *
4053 ATTTTTCGTAGATTCCATGATCGAGAAATCGCATCATTTCGTCTTAATAGTTTGT-GTTTTGGGA
66 ATTTTTCGAACATTCCATGATCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGGAA
* * **
4117 ACAACTTTTGGTCATTGAATTTAAAACTTATTTACGTGAGAGCTGTTTCTCTCTTGCTTCTTGGA
131 ACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGA
* * * * * *
4182 CGAAATTCTGAACATTTCAAGCATTTACGAGTTCTTTTATAGCATCAGTTCCTATGAGTTTTCAA
196 CGAACTTCTGAACATTTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTATGAGTATTCAA
* * *
4247 GACGATCCATTCCTTCAAACAATTTTTCGAAAATTCCATGATCGGGAAGTCGCATCATTTGGTCT
261 GACGATCCATTCCTTCGACCAATTTTTCGAAAATTCCATGATCGGGAAATCGCATCATTTGGTCT
* * * * * *
4312 AAATAGTTTGTCATTATGGAAATAACTTTTGGTTTTTGAAATAAAAACTTATTTACGTGGGAATT
326 AAAAAGTTTGTCATTTTGGAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATT
* * * *
4377 GTTTCACTCTTGC-TCTTGGATGAACTTCCGAACAT-TTCAAA
391 GTTTCTCTCTTGCTTCTTGGACGAAATTCCGAAC-TCGTCAAA
** ** * ** * * *
4418 TTTTTATTAGTTCTTTTATAACTTTGGTTTTTGA-GAGTATTTAAGATGATTCATTCCTTCGACC
1 CATTTACGAGTTCTTTTATAACTTCGGTTCCT-ATGAGTATTCAAGATGATCCATTCCTTCAACC
** * * * * *
4482 AATTTTTTTAATATTCCATGATCGGGAAATCACAT-ATTTTGGTCTAAAAAGTTTTTCATTTTGT
65 AATTTTTCGAACATTCCATGATCGGGAAATCGCATCA-TTTGGTCTAAATAGTTTGTCATTTTGG
* * *
4546 AAACAACTTCTGGT-TTATGAATTAAAAACATATTTACATGAGAATTGTTTCTCTCTTGGC-TCT
129 AAACAACTTTTGGTCTT-TGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT-GCTTCT
** * * * * * *
4609 TAAACGAACTTCTGAACCTGTGAAACATTTATGAGTTTTTTTATAACTTCTA-TTCCTGA-GAGT
192 TGGACGAACTTCTGAACATTTCAAACTTTTACGAGTTCTTTTATAACTTC-AGTTCCT-ATGAGT
* * * * * ** * * *
4672 ATTCAAGACGATTCATTCCTTCAATCAATTTTTTGAACATTCCATTCTCTGTAAGTCGCATCATT
255 ATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAAAATTCCATGATCGGGAAATCGCATCATT
* * *
4737 TGGTCTTAATAGTTTGTCATTTTGGAAACAACTTTTGGTCCTTGAATTAAAAACTTATTTACGTG
320 TGGTCTAAAAAGTTTGTCATTTTGGAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTG
* * *
4802 AGAGTTGTTTCTCTCTTGCTTCTTGGACAAAATTCCAAACAT-GTCAAA
385 AGAATTGTTTCTCTCTTGCTTCTTGGACGAAATTCCGAAC-TCGTCAAA
* * * * * *
4850 CATTTACAAGTTCTTTTATAACATCGGTTCCTGTGAGTTTTCAAGATGATCTATTCCTTCGACCA
1 CATTTACGAGTTCTTTTATAACTTCGGTTCCTATGAGTATTCAAGATGATCCATTCCTTCAACCA
* * * * * * * * * * * *
4915 ATTTTTCAAAAAATCCATGATCGGGAAATTGCACCTTTTGTTCTTAATAGTTTGACATTGTGTAT
66 ATTTTTCGAACATTCCATGATCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGGAA
* * *
4980 ATAACTTTTGATCTTTGAATTAAAAACTTATTTACGTGGGAATTGTTTCTCTCTTGC-TCTTGGA
131 ACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGA
* * * * * *
5044 TGAACTTCCT-AACTTTTAAAATTTTTACGAGTTCTTTTATAACTTCAGTTCCTAAGAGTATTTA
196 CGAACTT-CTGAACATTTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTATGAGTATTCA
* * * * *
5108 AGATGATCCATTCCTTCGACCAA-TTTTCTGAACATTCCATGCTCGAGAAATAGCATCATTTGGT
260 AGACGATCCATTCCTTCGACCAATTTTTC-GAAAATTCCATGATCGGGAAATCGCATCATTTGGT
* * *
5172 CTAAAAAGTTTTTCATTTTGTAAACAACTTTTGGT-TTATAAATTAAAAACTTATTTACGTGAGA
324 CTAAAAAGTTTGTCATTTTGGAAACAACTTTTGGTCTT-TGAATTAAAAACTTATTTACGTGAGA
* * ** * * * *
5236 ATTGTTTCTTTCTTGGTTCTTAAATGAACTTCCGAGC-CTGTGAAA
388 ATTGTTTCTCTCTTGCTTCTTGGACGAAATTCCGAACTC-GTCAAA
* ** * *
5281 CATTTACGAGTTCGTTTATAACTTTTGTTCCTGA-GAGTATTCAAGATGATCCATTCCATCAATC
1 CATTTACGAGTTCTTTTATAACTTCGGTTCCT-ATGAGTATTCAAGATGATCCATTCCTTCAACC
** * * * *
5345 AATTTTTCGAACATTCCATTCTCTGGAAGTCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTA
65 AATTTTTCGAACATTCCATGATCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGGA
* * * * *
5410 AACAACTTTTGTTCTTTAAATTAAAAACTTATTTACGTGAGAATTCTTTCTCTCTTGGTTCTTTG
130 AACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGG
* * * *
5475 ACGAAATTTTG-A-ATTCATCAAACTTTTACGAGTTCTTTTATAACTTC-GATT-CTTTAAAGTA
195 ACGAACTTCTGAACATT--TCAAACTTTTACGAGTTCTTTTATAACTTCAG-TTCCTAT-GAGTA
* * * * *
5536 TTCAAGACGATCCCTTCCTTCGAGCAATTTTTC-AAAAATCCATGGTTCGGG-TATCGCATCATT
256 TTCAAGACGATCCATTCCTTCGACCAATTTTTCGAAAATTCCAT-GATCGGGAAATCGCATCATT
* ***
5599 TGGTCTAAAAAGTTTGTTATTTTGTTGACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTG
320 TGGTCTAAAAAGTTTGTCATTTTGGAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTG
*
5664 AGAGTTGTTTCTCT-TT-CTTCTTGGACGAAATTCCGAACTCGTCAAA
385 AGAATTGTTTCTCTCTTGCTTCTTGGACGAAATTCCGAACTCGTCAAA
* * * * * * *
5710 CGTTTACGAGTTCTTTTATAACATCGGTTCTTGTGAATATTTAAGATGATCCATTCCTTCAACTA
1 CATTTACGAGTTCTTTTATAACTTCGGTTCCTATGAGTATTCAAGATGATCCATTCCTTCAACCA
* * * * ** * ** * *
5775 GTTTTCCGTACATTCCATTATCAAGAAATCACATCATTTCATCTTAATAGTTTCTCATTTTGGAA
66 ATTTTTCGAACATTCCATGATCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGGAA
* * * * * *
5840 AGAACTTTTGGTCCTTGAATTAAAAAAACTTATTTATGTGGGAATTGTTTCTCTCTT-ATTCTTA
131 ACAACTTTTGGTCTTTGAATT--AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTG
* * * *
5904 AACGAACTTCTAAAC-TTGTCAAACCTTTACGAGTTCTTTTATAACTTCTGTTCCTGA-GAGTAT
194 GACGAACTTCTGAACATT-TCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCT-ATGAGTAT
* * * **
5967 TCAAGATGATCCATTCCTTTGACCAATTTTTCGAAAATACCATGATCGGGAAATCAAATCATTTG
257 TCAAGACGATCCATTCCTTCGACCAATTTTTCGAAAATTCCATGATCGGGAAATCGCATCATTTG
* * ** * *
6032 GTCTAAATAGTTTGTTC-TTGTGGAAATTA-TTTTGGTCTTTAAATTAAAAACTTATTTATGTGA
322 GTCTAAAAAGTTTG-TCATTTTGGAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGA
* * * **
6095 GAATTGTTTCTC-CTTTGC-TCTTGGCCGAACTTTCGAACTTTTCAAA
386 GAATTGTTTCTCTC-TTGCTTCTTGGACGAAATTCCGAACTCGTCAAA
*** * * * *
6141 -AAAGACGAGTTCTTATATAACTTCGGTTCCTAAGGGTATTCAAGATGATCCATTCCCTCAACCA
1 CATTTACGAGTTCTTTTATAACTTCGGTTCCTATGAGTATTCAAGATGATCCATTCCTTCAACCA
* * * * * *
6205 ATTTTTCGAAC-TTCCCATGCTTGGGAAATCGTATCATTTGGACAAAATAGTTTGTCATTTTGTA
66 ATTTTTCGAACATT-CCATGATCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGGA
* * *
6269 AACAACTTTTGGTCTTTAAATT-AAAACTTATTTACGTTAGAGTTGTTTCTCTCTTGCTTCTTGG
130 AACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGG
* * ** * * * *
6333 ATGAAATTCCAAACATGTCAAACATTTACGAGTTCTTTTATAA-TATC-GATTCCTGTGAGTTTT
195 ACGAACTTCTGAACATTTCAAACTTTTACGAGTTCTTTTATAACT-TCAG-TTCCTATGAGTATT
* * *
6396 CAAGACGATCCAATCCTTCGACTAATTTTTCGAAAATTCCATGATCGAGAAATCGCATCATTTGG
258 CAAGACGATCCATTCCTTCGACCAATTTTTCGAAAATTCCATGATCGGGAAATCGCATCATTTGG
* * * * * *
6461 TCTAAATAGTTTGTCATTGTGGAAATAACTTTTGGTCTATGAATTAAAAAATTATTTACGTGGGA
323 TCTAAAAAGTTTGTCATTTTGGAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGA
* * * * ** *
6526 ATTGTTTCTCTCTTGC-TATTGGATGAACTTTCGAACTTTTTAAA
388 ATTGTTTCTCTCTTGCTTCTTGGACGAAATTCCGAACTCGTCAAA
** * * * * *
6570 TTTTTACGAGTCCTTTTAGAACTTCGGTTCCTAAGAGTATTCAAGACGATCCATTCCTTCGACCA
1 CATTTACGAGTTCTTTTATAACTTCGGTTCCTATGAGTATTCAAGATGATCCATTCCTTCAACCA
* * * ** * * * * * *
6635 ATTTTCCGAATATTCCATGCTCGAAAAATCGAATCATTAGGTCCAAAAAAATTT-TCATTTTGTA
66 ATTTTTCGAACATTCCATGATCGGGAAATCGCATCATTTGGT-CTAAATAGTTTGTCATTTTGGA
* * * * * * * **
6699 AACAACTTTTGGTCTATGAACTAAAAACTTATTTACATGAGAATTATTTCTCCCTTGGTTTTTAA
130 AACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGG
* * * * * * *
6764 ACGAACTTCCGAAC-CTACGAAACATTTACGGGTTCTTTTATAACTTCTGTTCCTAAGAGTATTC
195 ACGAACTTCTGAACATTTC-AAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTATGAGTATTC
* * * * * * * * ** **
6828 AAGAC-ATCCGA-ACATT---CC-A-TTCTC-AGGAAGTCACATCATTTGGTCTAAAAAGTTTGT
259 AAGACGATCC-ATTCCTTCGACCAATTTTTCGA-AAATTC-CATGA-TCGG--GAAATCG--CAT
* * * * ***
6885 CATTT--TGTAAACA----G-C-TTTTTG-----AC-TTTGAAT-TAAAAACTT--A------TT
316 CATTTGGTCTAAAAAGTTTGTCATTTTGGAAACAACTTTTG-GTCTTTGAA-TTAAAAACTTATT
* * * * ** *
6927 TACGTGAGAATTTTTTCTGTCTTGGTTCTTTGACG-AATTTTGAACTTGTCAAA
379 TACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAAATTCCGAACTCGTCAAA
* * * * * * * *
6980 CTTTTACGAATTCTTTTATAACTTCGATTCCT-TAAAGTATACAAGATGATCCCTTCCTTCGAGC
1 CATTTACGAGTTCTTTTATAACTTCGGTTCCTAT-GAGTATTCAAGATGATCCATTCCTTCAACC
* * * * * * *
7044 AATTTTTCGAACATTCCATGCTTCTGG-TATCGCATCATTTAGTTTAAAAAGTTTGTCATTTTGT
65 AATTTTTCGAACATTCCATG-ATCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGG
* * *
7108 AAACAACTTTTGGTCTTTGAATTAAAAACTTGTTTACGTGAGAGTTGTTTCTCTCTTTCTTCTTG
129 AAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTG
* * * * *
7173 GACGAAATTTTGAAC-TTGTCAAACATTTACAAGTTCTTTTATAACATT-GGTTCCTATGAGTAT
194 GACGAACTTCTGAACATT-TCAAACTTTTACGAGTTCTTTTATAAC-TTCAGTTCCTATGAGTAT
* * * * * * *
7236 TCAAGATGATCCTTTCCTTCAACTAATTTTTCGAACATTCCATGACCGCGAAATCGCATCATTTG
257 TCAAGACGATCCATTCCTTCGACCAATTTTTCGAAAATTCCATGATCGGGAAATCGCATCATTTG
* * * * *
7301 GTCTTAATAGTTTGTCATTTTGGAAACAACTTTTGGTCCTTAAATTAAAAACTTATTTAGGTG-G
322 GTCTAAAAAGTTTGTCATTTTGGAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAG
* * *
7365 AACTTGTTTCTCTCTTG-TTCTTAGACGAACTTCCGAACTTGTCAAA
387 AA-TTGTTTCTCTCTTGCTTCTTGGACGAAATTCCGAACTCGTCAAA
* * *
7411 -ACTTTACGAGTTCTTTTATAACTTTGATTCCTGA-GAGTATTCAAGACGATCCATTCCTTCAAC
1 CA-TTTACGAGTTCTTTTATAACTTCGGTTCCT-ATGAGTATTCAAGATGATCCATTCCTTCAAC
* * * * * * *
7474 CAATTTTTCAAACATTCCGTGCTCGGGAAATCGTATCATTTGGACTAAAAAGTTTGTCATTTTGT
64 CAATTTTTCGAACATTCCATGATCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGG
* * *
7539 AAACAAATTTTGGTCTTTGAATTAAAAACTTATTTGCGTGAGAGTTGTTTCTCTCTTGCTTCTTG
129 AAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTG
* * * * * * * * * *
7604 GATGAAATTCCGTACATGTCAAACATTTATGAGTTCTTTTATAACATT-GGTTCCTGTGAGTTTT
194 GACGAACTTCTGAACATTTCAAACTTTTACGAGTTCTTTTATAAC-TTCAGTTCCTATGAGTATT
* * * *
7668 AAAAACGATCCATTCCTTCAACCAAATTTTT-GAAAATTTCATGATCGGGAAATCGCATCATTTG
258 CAAGACGATCCATTCCTTCGACC-AATTTTTCGAAAATTCCATGATCGGGAAATCGCATCATTTG
* * * * * *
7732 GTCTAAATAGTTTGTCATTGTGGAAATAACATTTGGTCTTTGTATTAGAAACTTATTTACGTG-G
322 GTCTAAAAAGTTTGTCATTTTGGAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAG
*** * * ** **
7796 AATTGTTTCTCTCTTG-AAATTGGATGAACTTTTGAACTTTTCAAA
387 AATTGTTTCTCTCTTGCTTCTTGGACGAAATTCCGAACTCGTCAAA
** * *
7841 TTTTTACGAGTTCTTTTATAACTTC-GTTCCTGA-GAGTATTCAAGACGATCCATTCCTTCGACC
1 CATTTACGAGTTCTTTTATAACTTCGGTTCCT-ATGAGTATTCAAGATGATCCATTCCTTCAACC
* * * * *
7904 AATTTTCCAAACATTCCATGCTCGGGAAAATCGCATCATTTGGTCTAAACAGTTTTTCATTTTGG
65 AATTTTTCGAACATTCCATGATCGGG-AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGG
** * * * *
7969 AAACAACTTTTGGTCTACGAATTAAAAACTTATTTATGTGAGAATTG-TT-TCTCTTGGTTATTA
129 AAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTG
* * ** * * * * * * * * *
8032 AATGAACTTCCAAACCTGTGAAGCATTTACAAGTTCATTTATAACTTTTA-TTCTTGA-GAGTAT
194 GACGAACTTCTGAACATTTCAAACTTTTACGAGTTCTTTTATAAC-TTCAGTTCCT-ATGAGTAT
* ** *
8095 TCAAGACG------T-C--CG---AA-----C----ATTCCCTTCTCGGGAAGTCGCATCATTTG
257 TCAAGACGATCCATTCCTTCGACCAATTTTTCGAAAATTCCATGATCGGGAAATCGCATCATTTG
* * * * *
8139 GTCTAAACAGTTTGTCATTTTGTAAACAA-TTTTGGTCCTTGAATTAAAAACTTATTTATGTGGG
322 GTCTAAAAAGTTTGTCATTTTGGAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAG
* * * **
8203 AATTGTTTCTCTCTTGC-TCTTGGATGAACTTCAGAACTTTTCAAA
387 AATTGTTTCTCTCTTGCTTCTTGGACGAAATTCCGAACTCGTCAAA
** * * * * *
8248 TTTTTTA-AAGTACTTCTGTAACTTCGGTT-CT-TGAAAGTATTCAAGATGATCCATTCCTTCGA
1 -CATTTACGAGTTCTTTTATAACTTCGGTTCCTATG--AGTATTCAAGATGATCCATTCCTTCAA
* * * *
8310 CCAA-TTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGCCTAAAAAGTTTTTCATTTT
63 CCAATTTTTC-GAACATTCCATGATCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT
* * * * * * *
8374 GTAAAAAACTTTTGGTCTATAAATTAAAAATTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCA
127 GGAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCT
** * * * * * * * *
8439 TAAATGAACTTCTGAACCTGTGAAACATTTATGAGTTCTTTTAAAACTTCTGTTCCTGA-GAGTA
192 TGGACGAACTTCTGAACATTTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCT-ATGAGTA
*
8503 TTCAAGACAATCCATT
256 TTCAAGACGATCCATT
8519 GCATAAATCA
Statistics
Matches: 4030, Mismatches: 779, Indels: 323
0.79 0.15 0.06
Matches are distributed among these distances:
406 29 0.01
407 187 0.05
408 60 0.01
409 77 0.02
410 242 0.06
411 18 0.00
412 9 0.00
414 2 0.00
415 8 0.00
416 9 0.00
417 10 0.00
418 10 0.00
419 1 0.00
421 1 0.00
422 1 0.00
423 9 0.00
424 9 0.00
425 10 0.00
426 5 0.00
427 36 0.01
428 198 0.05
429 286 0.07
430 689 0.17
431 1553 0.39
432 552 0.14
433 19 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.40
Consensus pattern (432 bp):
CATTTACGAGTTCTTTTATAACTTCGGTTCCTATGAGTATTCAAGATGATCCATTCCTTCAACCA
ATTTTTCGAACATTCCATGATCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGGAA
ACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGA
CGAACTTCTGAACATTTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTATGAGTATTCAA
GACGATCCATTCCTTCGACCAATTTTTCGAAAATTCCATGATCGGGAAATCGCATCATTTGGTCT
AAAAAGTTTGTCATTTTGGAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATT
GTTTCTCTCTTGCTTCTTGGACGAAATTCCGAACTCGTCAAA
Found at i:8281 original size:193 final size:194
Alignment explanation
Indices: 7913--8293 Score: 459
Period size: 193 Copynumber: 2.0 Consensus size: 194
7903 CAATTTTCCA
*
7913 AACATTCCATGCTCGGGAAAATCGCATCATTTGGTCTAAACAGTTTTTCATTTTGGAAACAACTT
1 AACATTCCATGCTCGGGAAAATCGCATCATTTGGTCTAAACAGTTTGTCATTTTGGAAACAACTT
*
7978 TTGGTCTACGAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTTGGTTATTAAATGAACTTCC
66 TTGGTCTACGAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTTGGCTATTAAATGAACTTCC
* * ** *
8043 AAACCTGTGAAGCATTTACAAGTTCATTTATAACTTTTATTCTTGAGAGTATTCAAGACGTCCG
131 AAACCTGTAAAGCATTTACAAGTACATTTATAACTTCGATTCTTGAAAGTATTCAAGACGTCCG
* * * *
8107 AACATTCCCTTCTCGGG-AAGTCGCATCATTTGGTCTAAACAGTTTGTCATTTTGTAAACAA-TT
1 AACATTCCATGCTCGGGAAAATCGCATCATTTGGTCTAAACAGTTTGTCATTTTGGAAACAACTT
* * * * **
8170 TTGGTCCT-TGAATTAAAAACTTATTTATGTGGGAATTGTTTCTCTCTTGCTCTTGGATGAACTT
66 TTGGT-CTACGAATTAAAAACTTATTTATGTGAGAATTGTTTCTCT-TGGCTATTAAATGAACTT
* * *** * *
8234 -CAGAACTTTTCAAATTTTTTA-AAGTAC-TTCTGTAACTTCGGTTCTTGAAAGTATTCAAGA
129 CCA-AACCTGT-AAAGCATTTACAAGTACATT-TATAACTTCGATTCTTGAAAGTATTCAAGA
8294 TGATCCATTC
Statistics
Matches: 158, Mismatches: 24, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
192 46 0.29
193 91 0.58
194 21 0.13
ACGTcount: A:0.29, C:0.17, G:0.16, T:0.39
Consensus pattern (194 bp):
AACATTCCATGCTCGGGAAAATCGCATCATTTGGTCTAAACAGTTTGTCATTTTGGAAACAACTT
TTGGTCTACGAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTTGGCTATTAAATGAACTTCC
AAACCTGTAAAGCATTTACAAGTACATTTATAACTTCGATTCTTGAAAGTATTCAAGACGTCCG
Found at i:8542 original size:216 final size:213
Alignment explanation
Indices: 8105--8542 Score: 484
Period size: 216 Copynumber: 2.0 Consensus size: 213
8095 TCAAGACGTC
* * * * * *
8105 CGAACATTCCCTTCTCGGGAAGTCGCATCATTTGGTCTAAACAGTTTGTCATTTTGTAAACAATT
1 CGAACATTCCATGCTCGGGAAATCGCATCATTTGGCCTAAAAAGTTTGTCATTTTGTAAAAAATT
* * * * **
8170 TTGGTCCTTGAATTAAAAACTTATTTATGTGGGAATTGTTTCTCTCTTGCTCTTGGATGAACTTC
66 TTGGTCCTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTCATAAATGAACTTC
* * * * ** * **
8235 AGAACTTTTCAAATTTTTTAAAGTACTTCTGTAACTTCGGTTCTTGAAAGTATTCAAGATGATCC
131 AGAACCTGTCAAAATTTATAAAGTACTTCTAAAACTTCGGTTCCTGAAAGTATTCAAGACAATCC
* **
8300 ATTCCTTCGACCAATTTT
196 ATTCCATAAACCAATTTT
*
8318 CTGAACATTCCATGCTCGGGAAATCGCATCATTTGGCCTAAAAAGTTTTTCATTTTGTAAAAAAC
1 C-GAACATTCCATGCTCGGGAAATCGCATCATTTGGCCTAAAAAGTTTGTCATTTTGTAAAAAA-
* *
8383 TTTTGGT-CTATAAATTAAAAATTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCATAAATGAA
64 TTTTGGTCCT-TAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT-GCTCATAAATGAA
* * * * * * *
8447 CTTCTGAACCTGTGAAACATTTAT-GAGTTCTTTTAAAACTTCTGTTCCTGAGAGTATTCAAGAC
127 CTTCAGAACCTGTCAAA-ATTTATAAAGTACTTCTAAAACTTCGGTTCCTGAAAGTATTCAAGAC
* *
8511 AATCCATTGCATAAATCAATTTTT
191 AATCCATTCCATAAACCAA-TTTT
8535 CGAACATT
1 CGAACATT
8543 TCATTCTCTG
Statistics
Matches: 183, Mismatches: 36, Indels: 9
0.80 0.16 0.04
Matches are distributed among these distances:
213 1 0.01
214 57 0.31
215 43 0.23
216 73 0.40
217 9 0.05
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.39
Consensus pattern (213 bp):
CGAACATTCCATGCTCGGGAAATCGCATCATTTGGCCTAAAAAGTTTGTCATTTTGTAAAAAATT
TTGGTCCTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTCATAAATGAACTTC
AGAACCTGTCAAAATTTATAAAGTACTTCTAAAACTTCGGTTCCTGAAAGTATTCAAGACAATCC
ATTCCATAAACCAATTTT
Found at i:10486 original size:216 final size:216
Alignment explanation
Indices: 10101--12494 Score: 2445
Period size: 215 Copynumber: 11.1 Consensus size: 216
10091 TTTCGTATCA
* *
10101 GGAAGTCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGCAAACAACTTTTGGTCTTTGAATAAA
1 GGAA-TCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAA
* * * * * *
10166 AAACTTATTTACATGAGAATTTTTTCTCTCTTTGTTCTTTGACGAAATTTCAAACTTGTCAAACT
65 AAACTTATTTACGTGAGAATTGTTTCTCTCTTTCTTCTTGGACGAAATTTCGAACTTGTCAAACA
* * * * * *
10231 TTTACGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAGGATGATCCCTTCCTTCGAGCAAT
130 TTTACGAGTTCTTTTATAACTTCGATTCCTGAGAGTATTCAAGATGATCCATTCCTTCGACCAAT
* *
10296 TTTTCGAACATTCTATGCTTTG
195 TTTTCGAACATTCCATGCTTCG
* *
10318 GGTATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAGACAACTTTTGGTCTTTGAATTAAA
1 GGAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAA
* * * * * *
10383 AACTTATTTACGTGAGAGTCGTTTCTATGTTTCTTCTTGGAAGAAATTACGAACTTGTCAAACAT
66 AACTTATTTACGTGAGAATTGTTTCTCTCTTTCTTCTTGGACGAAATTTCGAACTTGTCAAACAT
* * * * *
10448 TTACGAGTTCTATTGTAACATCGATTCCTGTGAGTATTCAAGATGATCCATTCCTT-AATCCAAT
131 TTACGAGTTCTTTTATAACTTCGATTCCTGAGAGTATTCAAGATGATCCATTCCTTCGA-CCAAT
* * *
10512 TTTTTGTACATTCCATG-ATCAG
195 TTTTCGAACATTCCATGCTTC-G
* * * * *
10534 TGAAATCGCATCATTT-GTCTTAATAGTTTGTCATTTTGGAAACAACTTTTGGTCCTTGAATTAA
1 -GGAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAA
*
10598 AAACTTATTTACGTCG-GAATTATTTCTCTCTTT-TTCTTGGAC-AAACTTTCGAACTTGTCAAA
65 AAACTTATTTACGT-GAGAATTGTTTCTCTCTTTCTTCTTGGACGAAA-TTTCGAACTTGTCAAA
* * * * * * *
10660 CCTTTACGAGTTCTTTTATAACTTTGGTTCCTGAGATTATTCAAGACGATTCTTTCCTTCGACCA
128 CATTTACGAGTTCTTTTATAACTTCGATTCCTGAGAGTATTCAAGATGATCCATTCCTTCGACCA
10725 A-TTTTCTGAACATTCCATGC-TCG
193 ATTTTTC-GAACATTCCATGCTTCG
* * * * * * *
10748 AGAAATCGCATCACTTGGT-TTAAAAGTTTTGCCATTTTGTAAACGACTTTTGGTCTTTAAATAA
1 -GGAATCGCATCATTTGGTCTAAAAAG-TTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
** * * *
10812 AAAACTTATTTACGTGAGAGCTGTTTCTCTCTTGCTTCTTGGATGAAA-TTCAGAACATGTCAAA
64 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTTCTTCTTGGACGAAATTTC-GAACTTGTCAAA
* * * * *
10876 CATTTACGAGTTCTTTTATAACATCGATTCCTGTGAGTTTTCAAGATGATCCATCCCTTCAACCA
128 CATTTACGAGTTCTTTTATAACTTCGATTCCTGAGAGTATTCAAGATGATCCATTCCTTCGACCA
* * *
10941 ATTTTTCGAAAAATCCATG-ATCAG
193 ATTTTTCGAACATTCCATGCTTC-G
* * * * * * * * * *
10965 GAAATTGTATCTTTTGGTTTAAATAGTTTTTCATTGTGGAAATAACTTTTGGTCTTTGAATTAAA
1 GGAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAA
* * * * * * * * * **
11030 AATTTATTTATGTTG-GCA---TTTCACTCTTGC-TCTTGGATGAACTTCCGAACTTTTCAAATT
66 AACTTATTTACG-TGAGAATTGTTTCTCTCTTTCTTCTTGGACGAAATTTCGAACTTGTCAAACA
* * *
11090 TTTACGAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGA-CAAA
130 TTTACGAGTTCTTTTATAACTTCGATTCCTGAGAGTATTCAAGATGATCCATTCCTTCGACCAAT
*
11154 TTTTCTAAACATTCCATGCTT-G
195 TTTTC-GAACATTCCATGCTTCG
* * * *
11176 GGAAATCGCAT-ATATGGTCTAAAAAGTTTTTCATTTTGTAAACAACTTTTGGTCTATAAATTAA
1 GG-AATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAA
** ** * * * *
11240 AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAAATGAACTTCCGAACTTGTGAAACA
65 AAACTTATTTACGTGAGAATTGTTTCTCTCTTTCTTCTTGGACGAAATTTCGAACTTGTCAAACA
* * ** **
11305 TTTATGAGTTCTTTTATAACTTCTG-TTCCTGAGAGTATTCAAGACT-ATCCATTCCATAAATTA
130 TTTACGAGTTCTTTTATAACTTC-GATTCCTGAGAGTATTCAAGA-TGATCCATTCCTTCGACCA
* * *
11368 ATTTTTCGAACATTTCATTC-TCT
193 ATTTTTCGAACATTCCATGCTTCG
* * * *
11391 GGAAGTCGCATCATTTTGTCTAAAAAGTTTGTCATTTTGTAAACAAATTTTTGTCTTTTAATTAA
1 GGAA-TCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAA
* * ** * * * *
11456 AAACTTATTTACATGAAAATT-TTTCTCTCTTGGTTCTTTGATGAAATTTCGAACTTGTCAATCT
65 AAACTTATTTACGTGAGAATTGTTTCTCTCTTTCTTCTTGGACGAAATTTCGAACTTGTCAAACA
* * * * * * *
11520 TTTACGAGCTCTTTTATAACTCCGATTCCAT-AAAGTATTCAAGATGATCCCTTTCTTTGAGCAA
130 TTTACGAGTTCTTTTATAACTTCGATTCC-TGAGAGTATTCAAGATGATCCATTCCTTCGACCAA
*
11584 TTTTTAC-AACATTCCATGGTTCG
194 TTTTT-CGAACATTCCATGCTTCG
* * * *
11607 GGTATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAATTTTTTGTCTTTGAATTGAA
1 GGAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAA
* * * * *
11672 AACTTATTTACGTGAGAATTGTTTCTCTC-TTGTTCTTGGACGAACTTTTGAACTCGTCAAACCT
66 AACTTATTTACGTGAGAATTGTTTCTCTCTTTCTTCTTGGACGAAATTTCGAACTTGTCAAACAT
** * * *
11736 TTACGAGTTCTTTTATAACTTCTG-TTCCTGAGAGTATTCAAGGCGATCCATTCCATAGATTC-A
131 TTACGAGTTCTTTTATAACTTC-GATTCCTGAGAGTATTCAAGATGATCCATTCCTTCGA-CCAA
** * *
11799 TTTTTCGAACATTTAATTC-TCT
194 TTTTTCGAACATTCCATGCTTCG
* * * *
11821 GGAAGTCTCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAATAAATTTTGGTCTTTTAATTAA
1 GGAA-TCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAA
* *
11886 AAACTTATTTACGTGAGAGTTGTTTCTCTCTTTCTTCTTGGACGAAA-TTCTGAACTCGTCAAAC
65 AAACTTATTTACGTGAGAATTGTTTCTCTCTTTCTTCTTGGACGAAATTTC-GAACTTGTCAAAC
* * * * * *
11950 ATTTATGAGTTCTTTTATAACATCGGTTCCTGTGAGTATTCAAGATGATACATTCCTTCAACCAA
129 ATTTACGAGTTCTTTTATAACTTCGATTCCTGAGAGTATTCAAGATGATCCATTCCTTCGACCAA
** *
12015 TTTTTCCTACATTCCATG-ATCG
194 TTTTTCGAACATTCCATGCTTCG
* * * * * *
12037 GGAAATCGCATCATTTGGTCTTAATAGTTTGTCATTTTGGAAAAAACTTTTGGTCCTTAAATTAA
1 GG-AATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAA
* * * *
12102 AAACTTATTTACGTGGGAATTGTTTCTCTC-TTGTTCTTGGACGAACTTTCGAAATTGTCAAA-A
65 AAACTTATTTACGTGAGAATTGTTTCTCTCTTTCTTCTTGGACGAAATTTCGAACTTGTCAAACA
* * * * *
12165 CTTTATGAGTTCTTTTATAACTTCGGTCCCAT-AGAGTATTCAAG-GGATCTATTCCTTCGACCA
130 -TTTACGAGTTCTTTTATAACTTCGATTCC-TGAGAGTATTCAAGATGATCCATTCCTTCGACCA
*
12228 ATTTTCCGAACATTCCATGC-TCG
193 ATTTTTCGAACATTCCATGCTTCG
* * *
12251 AGAAATCGCATCAATTGGACTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAA
1 -GGAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAA
** * * * *
12316 AAACTTATTTACGTGAGAGCTATTTCTCTCTTGCTTCTTGGACGAAA-TTCTGAACATGTCTAAC
65 AAACTTATTTACGTGAGAATTGTTTCTCTCTTTCTTCTTGGACGAAATTTC-GAACTTGTCAAAC
* * *
12380 ATTTACGAGTTCTTTTATAACATC-AGTTCCTGTGAGTTTTCAAGATGATCCATCCATTCCTTCG
129 ATTTACGAGTTCTTTTATAACTTCGA-TTCCTGAGAGTATTCAAGATG----ATCCATTCCTTCG
* * * *
12444 ACCAATTTTTTGAAAATTTCATGC-TAG
189 ACCAATTTTTCGAACATTCCATGCTTCG
12471 GGAAATCGCATCATTTGGTCTAAA
1 GG-AATCGCATCATTTGGTCTAAA
12495 TCTTGGTTCT
Statistics
Matches: 1802, Mismatches: 308, Indels: 131
0.80 0.14 0.06
Matches are distributed among these distances:
210 2 0.00
211 67 0.04
212 89 0.05
213 14 0.01
214 170 0.09
215 713 0.40
216 658 0.37
217 35 0.02
219 1 0.00
220 53 0.03
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (216 bp):
GGAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAA
AACTTATTTACGTGAGAATTGTTTCTCTCTTTCTTCTTGGACGAAATTTCGAACTTGTCAAACAT
TTACGAGTTCTTTTATAACTTCGATTCCTGAGAGTATTCAAGATGATCCATTCCTTCGACCAATT
TTTCGAACATTCCATGCTTCG
Found at i:10944 original size:431 final size:428
Alignment explanation
Indices: 10097--12494 Score: 2550
Period size: 431 Copynumber: 5.6 Consensus size: 428
10087 TTCATTTCGT
* *
10097 ATCAGGAAGTCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGCAAACAACTTTTGGTCTTTGAA
1 ATCAGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
* * * * *
10162 TAAAAAACTTATTTACATGAGAATTTTTTCTCTCTTTGTTCTTTGACGAAATTTCAAACTTGTCA
66 TTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTT-TTCTTGGACGAAATTTCGAACTTGTCA
* * * * * * *
10227 AACTTTTACGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAGGATGATCCCTTCCTTCGAG
130 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGATGATCCATTCCTTCGAC
* * *
10292 CAATTTT-TCGAACATTCTATGCTTTGGG-TATCGCATCATTTGGTCTAAAAAGTTTGTCATTTT
195 CAATTTTCT-GAACATTCCATGC-TCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTT
* * * * * * *
10355 GTAGACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAGTCGTTTCTATGTTTCTTCT
258 GTAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT-CTTGTTCT
* * * * * *
10420 TGGAAGAAATT-ACGAACTTGTCAAACATTTACGAGTTCTATTGTAACATCGATTCCTGTGAGTA
322 TGGACGAAATTCA-GAACATGTCAAACATTTACGAGTTCTTTTATAACTTCG-TTCCTGAGAGTA
* *
10484 TTCAAGATGATCCATTCCTTAATCCAATTTTTTGTACATTCCATG
385 TTCAAGATGATCCATTCCTTAA-CCAATTTTTCGAACATTCCATG
* * * *
10529 ATCAGTGAAATCGCATCATTT-GTCTTAATAGTTTGTCATTTTGGAAACAACTTTTGGTCCTTGA
1 ATCAG-GAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGA
10593 ATTAAAAACTTATTTACGTCG-GAATTATTTCTCTCTTTTTCTTGGAC-AAACTTTCGAACTTGT
65 ATTAAAAACTTATTTACGT-GAGAATTATTTCTCTCTTTTTCTTGGACGAAA-TTTCGAACTTGT
* * * * * *
10656 CAAACCTTTACGAGTTCTTTTATAACTTTGGTTCCTGAGATTATTCAAGACGATTCTTTCCTTCG
128 CAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGATGATCCATTCCTTCG
* * * *
10721 ACCAATTTTCTGAACATTCCATGCTCGAGAAATCGCATCACTTGGT-TTAAAAGTTTTGCCATTT
193 ACCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAAAG-TTTGTCATTT
* * **
10785 TGTAAACGACTTTTGGTCTTTAAATAAAAAACTTATTTACGTGAGAGCTGTTTCTCTCTTGCTTC
257 TGTAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTG-TTC
* * * *
10850 TTGGATGAAATTCAGAACATGTCAAACATTTACGAGTTCTTTTATAACATCGATTCCTGTGAGTT
321 TTGGACGAAATTCAGAACATGTCAAACATTTACGAGTTCTTTTATAACTTCG-TTCCTGAGAGTA
* * *
10915 TTCAAGATGATCCATCCCTTCAACCAATTTTTCGAAAAATCCATG
385 TTCAAGATGATCCATTCCTT-AACCAATTTTTCGAACATTCCATG
* * * * * * * * *
10960 ATCAGGAAATTGTATCTTTTGGTTTAAATAGTTTTTCATTGTGGAAATAACTTTTGGTCTTTGAA
1 ATCAGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
* * * * ** * * * *
11025 TTAAAAATTTATTTATGTTG-G---CATTTCACTCTTGCTCTTGGATGAACTTCCGAACTTTTCA
66 TTAAAAACTTATTTACG-TGAGAATTATTTCTCTCTTTTTCTTGGACGAAATTTCGAACTTGTCA
* *
11086 AATTTTTACGAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGAC
130 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGATGATCCATTCCTTCGAC
* * * * *
11151 AAATTTTCTAAACATTCCATGCTTGGGAAATCGCAT-ATATGGTCTAAAAAGTTTTTCATTTTGT
195 CAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGT
* *
11215 AAACAACTTTTGGTCTATAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTA
260 AAACAACTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT-GTTCTTG
* * * * * * *
11280 AATGAACTTCCGAACTTGTGAAACATTTATGAGTTCTTTTATAACTTCTGTTCCTGAGAGTATTC
324 GACGAAATTCAGAACATGTCAAACATTTACGAGTTCTTTTATAACTTC-GTTCCTGAGAGTATTC
* ** * *
11345 AAGACT-ATCCATTCCATAAATTAATTTTTCGAACATTTCATT
388 AAGA-TGATCCATTCC-TTAACCAATTTTTCGAACATTCCATG
* * * * * * *
11387 CTCTGGAAGTCGCATCATTTTGTCTAAAAAGTTTGTCATTTTGTAAACAAATTTTTGTCTTTTAA
1 ATCAGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
* * * * *
11452 TTAAAAACTTATTTACATGAAAATT-TTTCTCTCTTGGTTCTTTGATGAAATTTCGAACTTGTCA
66 TTAAAAACTTATTTACGTGAGAATTATTTCTCTCTT-TTTCTTGGACGAAATTTCGAACTTGTCA
* * * * * * * *
11516 ATCTTTTACGAGCTCTTTTATAACTCCGATTCCAT-AAAGTATTCAAGATGATCCCTTTCTTTGA
130 AACTTTTACGAGTTCTTTTATAACTTCGGTTCC-TGAGAGTATTCAAGATGATCCATTCCTTCGA
* * * *
11580 GCAATTTT-TACAACATTCCATGGTTCGGG-TATCGCATCATTTGGTCTAAAAAGTTTGTCATTT
194 CCAATTTTCT-GAACATTCCAT-GCTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTT
* * * *
11643 TGTAAACAATTTTTTGTCTTTGAATTGAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGTTCT
257 TGTAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGTTCT
* ** *
11708 TGGACGAACTTTTGAAC-TCGTCAAACCTTTACGAGTTCTTTTATAACTTCTGTTCCTGAGAGTA
322 TGGACGAAATTCAGAACAT-GTCAAACATTTACGAGTTCTTTTATAACTTC-GTTCCTGAGAGTA
** * * ** *
11772 TTCAAGGCGATCCATTCCATAGATTC-ATTTTTCGAACATTTAATT
385 TTCAAGATGATCCATTCCTTA-A-CCAATTTTTCGAACATTCCATG
* * * * * * *
11817 CTCTGGAAGTCTCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAATAAATTTTGGTCTTTTAA
1 ATCAGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
* * *
11882 TTAAAAACTTATTTACGTGAGAGTTGTTTCTCTCTTTCTTCTTGGACGAAA-TTCTGAACTCGTC
66 TTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTT-TTCTTGGACGAAATTTC-GAACTTGTC
* * * * * *
11946 AAACATTTATGAGTTCTTTTATAACATCGGTTCCTGTGAGTATTCAAGATGATACATTCCTTCAA
129 AAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGATGATCCATTCCTTCGA
* * *
12011 CCAATTTTTCCT--ACATTCCATGATCGGGAAATCGCATCATTTGGTCTTAATAGTTTGTCATTT
194 CCAA-TTTT-CTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTT
* * * *
12074 TGGAAAAAACTTTTGGTCCTTAAATTAAAAACTTATTTACGTGGGAATTGTTTCTCTCTTGTTCT
257 TGTAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGTTCT
* * *
12139 TGGACGAACTTTC-GAA-ATTGTCAAA-ACTTTATGAGTTCTTTTATAACTTCGGTCCCAT-AGA
322 TGGACGAA-ATTCAGAACA-TGTCAAACA-TTTACGAGTTCTTTTATAACTTC-GTTCC-TGAGA
* * * *
12200 GTATTCAAG-GGATCTATTCCTTCGACCAATTTTCCGAACATTCCATG
382 GTATTCAAGATGATCCATTCCTT-AACCAATTTTTCGAACATTCCATG
* * *
12247 CTC-GAGAAATCGCATCAATTGGACTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGA
1 ATCAG-GAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGA
** * *
12311 ATTAAAAACTTATTTACGTGAGAGCTATTTCTCTCTTGCTTCTTGGACGAAA-TTCTGAACATGT
65 ATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTT-TTTCTTGGACGAAATTTC-GAACTTGT
* * * * * *
12375 CTAACATTTACGAGTTCTTTTATAACATCAGTTCCTGTGAGTTTTCAAGATGATCCATCCATTCC
128 CAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGATG----ATCCATTCC
* * * *
12440 TTCGACCAATTTTTTGAAAATTTCATGCTAGGGAAATCGCATCATTTGGTCTAAA
189 TTCGACCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAA
12495 TCTTGGTTCT
Statistics
Matches: 1669, Mismatches: 244, Indels: 104
0.83 0.12 0.05
Matches are distributed among these distances:
426 2 0.00
427 220 0.13
428 130 0.08
429 16 0.01
430 497 0.30
431 644 0.39
432 91 0.05
433 19 0.01
434 50 0.03
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (428 bp):
ATCAGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
TTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTTTTCTTGGACGAAATTTCGAACTTGTCAA
ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGATGATCCATTCCTTCGACC
AATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTA
AACAACTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGTTCTTGGA
CGAAATTCAGAACATGTCAAACATTTACGAGTTCTTTTATAACTTCGTTCCTGAGAGTATTCAAG
ATGATCCATTCCTTAACCAATTTTTCGAACATTCCATG
Found at i:12863 original size:581 final size:578
Alignment explanation
Indices: 11920--13073 Score: 1466
Period size: 581 Copynumber: 2.0 Consensus size: 578
11910 TCTCTCTTTC
* **
11920 TTCTTGGACGAAATTCTGAACTCGTCAAACATTTATGAGTTCTTTTATAACATCGGTTCCTGTGA
1 TTCTTGGACGAAATTCTGAACTCGTCAAACATTTACGAGTTCTTTTATAACATCGGTTCCTAAGA
* *
11985 GTATTCAAGATGATACATTCCTTCAACCAATTTTTCCTACATTCCATGATCGGGAAATCGCATCA
66 GTATTCAAGATGATACATTCCTTCAACAAATTTTTCCTACATTCCATGATCGGGAAATCCCATCA
* *
12050 TTTGGTCTTAATAGTTTGTCATTTTGGAAAAAACTTTTGGTCCTTAAATTAAAAACTTATTTACG
131 TTTGGTCTAAATAGTTTGTCATTTTGGAAAAAACTTTAGGTCCTTAAATTAAAAACTTATTTACG
* * * *
12115 TGGGAATTGTTTCTCTCTTGTTCTTGGACGAACTTTCGAAATTGTCAAAACTTTATGAGTTCTTT
196 TGAGAATTGTTTCGCTCTTGTTCTTGGACAAACTTTCGAAATTGTCAAAACTTTACGAGTTCTTT
* * *
12180 TATAACTTCGGTCCCATAGAGTATTCAAGGGATCTATTCCTTCGACCAATTTTCCGAACATTCCA
261 TATAACTTCGATCCCATAGAGTATTCAAGGGATCCATTCCTTCGACCAATTTTCCAAACATTCCA
*
12245 TGCTCGAGAAATCGCATCAATTGGACTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTG
326 TGCTCGAGAAATCGCATCAATTGGACTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTA
* *
12310 AATT-AAAAACTTATTTACGTGAGAGCTATTTCTCTCTTGCTTCTTGGACGAAATTCTGAACATG
391 AATTAAAAAACTTATTTACGTGAGAACTATTTCTCTCTTGCTTCTTGGACGAAATTCTAAACATG
* *
12374 TCTAACATTTACGAGTTCTTTTATAACATCAGTTCCTGTGAGT-T-TTCAAGATGATCCATCCAT
456 TCAAACATTTACGAGTTCTTTTATAACATCAGTTAC-G-GAGTGTATTCAAGATG----ATCCAT
* *
12437 TCCTTCGACCAATTTTTTGAAAATTTCATGCTAGGGAAATCGCATCATTTGGTCTAAATCTTGG
515 TCCTTCGACCAATTTTTCGAAAATTTCATGCTAGGGAAATCACATCATTTGGTCTAAATCTTGG
* * * *
12501 TTCTTGGATGAACTT-TCGAACTTGTCAAACATTTACGAGTTCTTTTATAACGTCGGTTCCTAAG
1 TTCTTGGACGAAATTCT-GAACTCGTCAAACATTTACGAGTTCTTTTATAACATCGGTTCCTAAG
* * * * * *
12565 AGTATTCAATATGATCCATTCCTTCGACAAATTTTT-TTAGCATTTCATGCTCGGGAAATCCCAT
65 AGTATTCAAGATGATACATTCCTTCAACAAATTTTTCCTA-CATTCCATGATCGGGAAATCCCAT
* ** * * * *
12629 CATTTGGTC-AAAT-TTTTAGTCATTTTTTAAACAACTTTAGGTCTTTGAATTAAAATCTTATTT
129 CATTTGGTCTAAATAGTTT-GTCATTTTGGAAAAAACTTTAGGTCCTTAAATTAAAAACTTATTT
*
12692 ACGTGAGAATTGTTTCGCTCTTGGTTCTTGGACAAAC-TTCTGAACTTGTC-AAACATTTACGAG
193 ACGTGAGAATTGTTTCGCTCTT-GTTCTTGGACAAACTTTC-GAAATTGTCAAAAC-TTTACGAG
* * * * * * **
12755 TTCTTTTATAACTTTGAT-TCTTGAGAGTATTCAAGATGATCCATTCTTTTGACCAATTTTTTAA
255 TTCTTTTATAACTTCGATCCCAT-AGAGTATTCAAG-GGATCCATTCCTTCGACCAATTTTCCAA
** * * * * *
12819 ACATTCCATTTTTGGGAAATCGCATCATTTGGTC-AAATAGTTTGTCATTTTGTAAACAACTTTT
318 ACATTCCATGCTCGAGAAATCGCATCAATTGGACTAAAAAGTTTGTCATTTTGTAAACAACTTTT
* * * * * * * *
12883 TGTCTTTAAATTAAAAAACTTGTTTACGTGAGAATTGTTTCTCTCTTGGTTGTTGGACGAACTTT
383 GGTCTTTAAATTAAAAAACTTATTTACGTGAGAACTATTTCTCTCTTGCTTCTTGGACGAAATTC
* * * * *
12948 TAAACTTGTCAAATATTTACGATTTCTTTTATAACTTCGGTTACGGAGTGTATTCAAGATGATCC
448 TAAACATGTCAAACATTTACGAGTTCTTTTATAACATCAGTTACGGAGTGTATTCAAGATGATCC
** * *
13013 ATTCCTTCGACCAATTTTTCGAGCATTTCATGCTCGGGAAATCACATTATTTGGTCTAAAT
513 ATTCCTTCGACCAATTTTTCGAAAATTTCATGCTAGGGAAATCACATCATTTGGTCTAAAT
13074 AGTTTTTCCT
Statistics
Matches: 491, Mismatches: 71, Indels: 25
0.84 0.12 0.04
Matches are distributed among these distances:
578 59 0.12
579 3 0.01
580 77 0.16
581 214 0.44
582 138 0.28
ACGTcount: A:0.27, C:0.18, G:0.15, T:0.40
Consensus pattern (578 bp):
TTCTTGGACGAAATTCTGAACTCGTCAAACATTTACGAGTTCTTTTATAACATCGGTTCCTAAGA
GTATTCAAGATGATACATTCCTTCAACAAATTTTTCCTACATTCCATGATCGGGAAATCCCATCA
TTTGGTCTAAATAGTTTGTCATTTTGGAAAAAACTTTAGGTCCTTAAATTAAAAACTTATTTACG
TGAGAATTGTTTCGCTCTTGTTCTTGGACAAACTTTCGAAATTGTCAAAACTTTACGAGTTCTTT
TATAACTTCGATCCCATAGAGTATTCAAGGGATCCATTCCTTCGACCAATTTTCCAAACATTCCA
TGCTCGAGAAATCGCATCAATTGGACTAAAAAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTA
AATTAAAAAACTTATTTACGTGAGAACTATTTCTCTCTTGCTTCTTGGACGAAATTCTAAACATG
TCAAACATTTACGAGTTCTTTTATAACATCAGTTACGGAGTGTATTCAAGATGATCCATTCCTTC
GACCAATTTTTCGAAAATTTCATGCTAGGGAAATCACATCATTTGGTCTAAATCTTGG
Found at i:13005 original size:216 final size:215
Alignment explanation
Indices: 12495--13280 Score: 1009
Period size: 216 Copynumber: 3.6 Consensus size: 215
12485 TTGGTCTAAA
* * * *
12495 TCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAACGTCGGTTC
1 TCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGATTC
* * * * *
12560 CTAAGAGTATTCAATATGATCCATTCCTTCGACAAATTTTTTTAGCATTTCATGCTCGGGAAATC
66 CTGAGAGTATTCAAGATGATCCATTCCTTCGACAAATTTTTTGAACATTCCATGCTCGGGAAATC
* * * * *
12625 CCATCATTTGGTCAAAT-TTTTAGTCATTTTTTAAACAACTTTAGGTCTTTGAATTAAAATCTTA
131 GCATCATTTGGTCAAATAGTTT-GTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
*
12689 TTTACGTGAGAATTGTTTCGC
195 TTTACGTGAGAATTGTTTCTC
* * *
12710 TCTTGGTTCTTGGACAAACTTCTGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTTGATTC
1 TCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGATTC
* * * * * ** *
12775 TTGAGAGTATTCAAGATGATCCATTCTTTTGACCAATTTTTTAAACATTCCATTTTTGGGAAATC
66 CTGAGAGTATTCAAGATGATCCATTCCTTCGACAAATTTTTTGAACATTCCATGCTCGGGAAATC
* * *
12840 GCATCATTTGGTCAAATAGTTTGTCATTTTGTAAACAACTTTTTGTCTTTAAATTAAAAAACTTG
131 GCATCATTTGGTCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT-AAAAACTTA
12905 TTTACGTGAGAATTGTTTCTC
195 TTTACGTGAGAATTGTTTCTC
* *** * * * *
12926 TCTTGGTTGTTGGACGAACTTTTAAACTTGTCAAATATTTACGATTTCTTTTATAACTTCGGTTA
1 TCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGATTC
* * * * * *
12991 CGGAGTGTATTCAAGATGATCCATTCCTTCGACCAATTTTTCGAGCATTTCATGCTCGGGAAATC
66 CTGAGAGTATTCAAGATGATCCATTCCTTCGACAAATTTTTTGAACATTCCATGCTCGGGAAATC
* * * * * *
13056 ACATTATTTGGTCTAAATAGTTTTTCCTTTTGTAAACAACTTTTGGTCTTTGTATTACAAACTTA
131 GCATCATTTGGTC-AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
*
13121 TTTACATGAGAAGTT-TTTCTC
195 TTTACGTGAGAA-TTGTTTCTC
* * *
13142 TCTTGGTTCTTGGATGAACTTCCGAACTTGTTAAACATTTACGAGTTCTTTTACAACTTCGATTC
1 TCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGATTC
* * * *
13207 CTGCGAGTATTCAAGACGATCCATTCCTTTGACAAATTTTTTGAACATTCCATGCTCGGTAAATC
66 CTGAGAGTATTCAAGATGATCCATTCCTTCGACAAATTTTTTGAACATTCCATGCTCGGGAAATC
13272 GCATCATTT
131 GCATCATTT
13281 TGTCTTTGTA
Statistics
Matches: 485, Mismatches: 82, Indels: 7
0.84 0.14 0.01
Matches are distributed among these distances:
215 156 0.32
216 290 0.60
217 39 0.08
ACGTcount: A:0.26, C:0.17, G:0.15, T:0.42
Consensus pattern (215 bp):
TCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGATTC
CTGAGAGTATTCAAGATGATCCATTCCTTCGACAAATTTTTTGAACATTCCATGCTCGGGAAATC
GCATCATTTGGTCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTAT
TTACGTGAGAATTGTTTCTC
Found at i:13405 original size:181 final size:182
Alignment explanation
Indices: 13096--13445 Score: 449
Period size: 181 Copynumber: 1.9 Consensus size: 182
13086 TGTAAACAAC
* *
13096 TTTTGGTCTTTGTATTACAAACTTATTTACATGAGAAGTTTTTCTCTCTTGGTTCTTGGATGAAC
1 TTTTGGTCTTTGTATTAAAAACTTATTTACATGAGAAGTTTTTCTCTCTTGGTTCTTGGACGAAC
** * * **
13161 TTCCGAACTTGTTAAACATTTACGAGTTCTTTTACAACTTCGATTCCTGCGAGTATTCAAGACGA
66 TAACGAACTAGTCAAACATTTACGAGTTCTTTTACAACTTCGATTCCTGAAAGTATTCAAGACGA
* * *
13226 TCCATTCC-TTTGA-CAAATTTTTTGAACATTCCATGCTCGGTAAATCGCATCA
131 TCCA-TCCATTTGAGC-AATTGTTCGAACATTCCATACTCGGTAAATCGCATCA
** *
13278 TTTT-GTCTTTGTATTAAAAACTTATTTATGTGA-AATTTTTTTTCTCTCTT-GTTCTTGGACGA
1 TTTTGGTCTTTGTATTAAAAACTTATTTACATGAGAA--GTTTTTCTCTCTTGGTTCTTGGACGA
* * * * *
13340 ACTAACGAACTAGTCAAACTTTTGCGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGAC
64 ACTAACGAACTAGTCAAACATTTACGAGTTCTTTTACAACTTCGATTCCTGAAAGTATTCAAGAC
*
13405 GCTCCATCCATTTGAGCAATTGTTCGAACATTCCATACTCG
129 GATCCATCCATTTGAGCAATTGTTCGAACATTCCATACTCG
13446 AGAAATTGCA
Statistics
Matches: 144, Mismatches: 20, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
180 5 0.03
181 122 0.85
182 17 0.12
ACGTcount: A:0.26, C:0.19, G:0.14, T:0.41
Consensus pattern (182 bp):
TTTTGGTCTTTGTATTAAAAACTTATTTACATGAGAAGTTTTTCTCTCTTGGTTCTTGGACGAAC
TAACGAACTAGTCAAACATTTACGAGTTCTTTTACAACTTCGATTCCTGAAAGTATTCAAGACGA
TCCATCCATTTGAGCAATTGTTCGAACATTCCATACTCGGTAAATCGCATCA
Found at i:13629 original size:397 final size:404
Alignment explanation
Indices: 12997--14535 Score: 1340
Period size: 397 Copynumber: 3.7 Consensus size: 404
12987 GTTACGGAGT
* * * * * * *
12997 GTATTCAAGATGATCCATTCC-TTCGACCAATTTTTCGAGCATTTCATGCTCGGGAAATCACATT
1 GTATTCAAGACGATCCA-TCCATTTGAGCAA-TTTTCGAACATTCCATGCTCGAGAAAT-TCATT
* * * *
13061 ATTTGGTCTAAATAGTTTTTCCTTTTGTAAACAACTTTTGGTCTTTGTATTACAAACTTATTTAC
63 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAC
* * * *
13126 ATGAGAAGTTTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTTAAACATTTACGAGTTCT
128 ATGAGAA-TTTTTCTCTCTTAGTTCTTGGACGAACTTTCAAACTTGTTAAACATTTACGAGTTCT
** * *
13191 TTTACAACTTCGATTCCTGCGAGTATTCAAGACGATCCATTCCTTTGACAAATTTTTTGAACATT
192 TTTTTAACATCG-TTCCTGAGAGTATTCAAGACGATCCATTCCTTTGACAAATTTTTTGAACATT
* * * *
13256 CCATGCTCGGTAAATCGCATCATTTTGTC-TTTGT-A-T-TAAA-AACTTATT-T-ATG-TG-AA
256 TCATGCTCGGGAAATCACATCATTTGGTCATTTGTCATTGTAAACAACTT-TTGTCATGATGAAA
* * * *
13312 -A-TT-T-TTTTTCTCTCTTGTTCTTGGACGAACTAACGAACTAGTCAAACTTTTGCGAGTTCTT
320 TATTTATATTTTTATCTCTTGTTCTTGGACAAACTAACAAACTAGTC-AACTTTTACGAGTTCTT
13373 TTATAACTTTGATTCCTTAAA
384 TTATAACTTTGATTCCTTAAA
* *
13394 GTATTCAAGACGCTCCATCCATTTGAGCAATTGTTCGAACATTCCATACTCGAGAAATTGCATTA
1 GTATTCAAGACGATCCATCCATTTGAGCAATT-TTCGAACATTCCATGCTCGAGAAATT-CATTA
* *
13459 TTTGGTTTAAATAGTCTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACA
64 TTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACA
* * *
13524 TGAGAATTGTTTCTCTCTTTGTTTTTGGACGAACTTTCAAACTTGTTAAACATTCACGAGTTCTT
129 TGAGAATT-TTTCTCTCTTAGTTCTTGGACGAACTTTCAAACTTGTTAAACATTTACGAGTTCTT
* * * *
13589 TTTTAACATCAGTTCTTGAGAGTATTCAACACGATCCATTCCTTTGACTAATTTTCTGAACATTT
193 TTTTAACATC-GTTCCTGAGAGTATTCAAGACGATCCATTCCTTTGACAAATTTTTTGAACATTT
* * *
13654 CAGGCTCGGGAAATCATATCATTTGGTCAATTGTTTGTCATTTTGTAAACAACTTTTGGTCCTTG
257 CATGCTCGGGAAATCACATCATTTGGTC-A---TTTGTCA--TTGTAAACAACTTTT-GT-CATG
*
13719 AATGAAAAACTTATTTACGTGAGAATTTTTATCTCTTGTTCTTGGACAAACTTACAAACTAGTCA
314 -ATG--AAA--TATTTA--T----ATTTTTATCTCTTGTTCTTGGACAAACTAACAAACTAGTCA
* * *
13784 ACTTTTACGAGTTCTTTTATTATTTTGGTTCCTTAAA
368 ACTTTTACGAGTTCTTTTATAACTTTGATTCCTTAAA
* * * * * *
13821 GCATTCAAGAGGATTCATCCATTTGAGTAATTTTCTGAACATTCCATGCTCGAGAAACCTCATAA
1 GTATTCAAGACGATCCATCCATTTGAGCAATTTTC-GAACATTCCATGCTCGAGAAA-TTCATTA
*
13886 TTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACT
64 TTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACA
* *
13951 TGAAAATTATTTCT-T-TTAGTTCTTGGACGAACTTTCAAACTTGTCAAACATTTACGAGTTCTT
129 TGAGAATT-TTTCTCTCTTAGTTCTTGGACGAACTTTCAAACTTGTTAAACATTTACGAGTTCTT
** * * * * *
14014 TTTTAATGTTGGTTCCTGAGAGTATTCAAGATGATCCATTCCTTCGACCAATTTTTTAAACATTT
193 TTTTAA-CATCGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTGACAAATTTTTTGAACATTT
* * * *
14079 CATGCTCGGGAAATCCCATCATTTGGTCAAATTGTTTCTCATTTTGTAAACAACTTTTTCTCTTT
257 CATGCTCGGGAAATCACATCATTTGGTC--A---TTTGTCA--TTGTAAACAAC-TTTTGTC-AT
* * ** *
14144 GAATTAAAAACTTATTTACGTGAGAGTTTTT-TCGCTCTTGGTTCTTAGACAAACTTTCAAACTT
313 G-A-T-GAAA--TATTTA--T---A-TTTTTAT--CTCTT-GTTCTTGGACAAACTAACAAACTA
* * * *
14208 CTCAAACATTTACGAGTTCTTTTATAACTTGGGTTCC-TAAGA
364 GTC-AACTTTTACGAGTTCTTTTATAACTTTGATTCCTTAA-A
* * * * * * *
14250 GTATTCAACACGACCCATTCC-TTCGACCAATTTTTCGAACATTTCATTCTCGAGAAATTGCATC
1 GTATTCAAGACGATCCA-TCCATTTGAGCAA-TTTTCGAACATTCCATGCTCGAGAAATT-CATT
** * * * * * *
14314 ATTTGACCAAAATAATTT-TCATTTTGTAAACAACTTTTTGTCTTTAAATTAAAAACCTATTTAT
63 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAC
* * * * * * *
14378 GTGAGAATTGTTTCTCTCTTGGATGTTGGACGAACTTTCAAACTTGTCAAACATTTATGATTTCT
128 ATGAGAATT-TTTCTCTCTTAGTTCTTGGACGAACTTTCAAACTTGTTAAACATTTACGAGTTCT
** * * * * * * * * *
14443 TTAATAACTTCAATTACTGAGTGTATTCAAGATGACCCACTCCTTCGAGC-AATTTTTTAAACAT
192 TTTTTAACATC-GTTCCTGAGAGTATTCAAGACGATCCATTCCTTTGA-CAAATTTTTTGAACAT
* ** *
14507 TCCATTAT-GGGAAATCAAATCATTTGGTC
255 TTCATGCTCGGGAAATCACATCATTTGGTC
14536 TAAATAGTTT
Statistics
Matches: 954, Mismatches: 130, Indels: 84
0.82 0.11 0.07
Matches are distributed among these distances:
396 7 0.01
397 240 0.25
398 1 0.00
402 5 0.01
403 1 0.00
406 1 0.00
407 6 0.01
408 5 0.01
409 1 0.00
411 2 0.00
413 2 0.00
416 2 0.00
419 1 0.00
420 2 0.00
423 1 0.00
425 125 0.13
426 54 0.06
427 169 0.18
428 117 0.12
429 106 0.11
430 105 0.11
431 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.13, T:0.41
Consensus pattern (404 bp):
GTATTCAAGACGATCCATCCATTTGAGCAATTTTCGAACATTCCATGCTCGAGAAATTCATTATT
TGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACATG
AGAATTTTTCTCTCTTAGTTCTTGGACGAACTTTCAAACTTGTTAAACATTTACGAGTTCTTTTT
TAACATCGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTGACAAATTTTTTGAACATTTCATG
CTCGGGAAATCACATCATTTGGTCATTTGTCATTGTAAACAACTTTTGTCATGATGAAATATTTA
TATTTTTATCTCTTGTTCTTGGACAAACTAACAAACTAGTCAACTTTTACGAGTTCTTTTATAAC
TTTGATTCCTTAAA
Found at i:14273 original size:215 final size:216
Alignment explanation
Indices: 13278--14743 Score: 1564
Period size: 215 Copynumber: 6.8 Consensus size: 216
13268 AATCGCATCA
* *
13278 TTTT-GTCTTTGTATTAAAAACTTATTTATGTGA-AATTTTTTTTCTCTCTT-GTTCTTGGACGA
1 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAA--TTTTTTCTCTCTTGGTTCTTGGACGA
** * * * * * * * *
13340 ACTAACGAACTAGTCAAACTTTTGCGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGAC
64 ACTTTCAAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGAC
* * * * * ** * *
13405 G-CTCCA-TCCATTTGAGCAATTGTTCGAACATTCCATACTCGAGAAATTGCATTATTTGGTTTA
129 GAC-CCATTCC-TTCGAGCAATTTTTTGAACATTTCATGCTCGAGAAATCACATCATTTGGTCTA
*
13468 AATAGTCTGTCATTTTGTAAACAAC
192 AATAGTTTGTCATTTTGTAAACAAC
* * * *
13493 TTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTTGTTTTTGGACGAAC
1 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTTTTTCTCTCTTGGTTCTTGGACGAAC
* * * * * * *
13558 TTTCAAACTTGTTAAACATTCACGAGTTCTTTTTTAACATCAGTTCTTGAGAGTATTCAACACGA
66 TTTCAAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGA
* * * * * *
13623 TCCATTCCTTTGA-CTAATTTTCTGAACATTTCAGGCTCGGGAAATCATATCATTTGGTC--AAT
131 CCCATTCCTTCGAGC-AATTTTTTGAACATTTCATGCTCGAGAAATCACATCATTTGGTCTAAAT
*
13685 TGTTTGTCATTTTGTAAACAAC
195 AGTTTGTCATTTTGTAAACAAC
* * * *
13707 TTTTGGTCCTTGAATGAAAAACTTATTTACGTGAGAA-TTTTTATCTCTT-GTTCTTGGACAAAC
1 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTTTTTCTCTCTTGGTTCTTGGACGAAC
* * * * * * * * * *
13770 TTACAAACTAGTC-AACTTTTACGAGTTCTTTTATTATTTTGGTTCCTTAAAGCATTCAAGAGGA
66 TTTCAAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGA
** * * * * * * *
13834 TTCA-TCCATTTGAGTAATTTTCTGAACATTCCATGCTCGAGAAACCTCATAATTTGGTCTAAAT
131 CCCATTCC-TTCGAGCAATTTTTTGAACATTTCATGCTCGAGAAATCACATCATTTGGTCTAAAT
13898 AGTTTGTCATTTTGTAAACAAC
195 AGTTTGTCATTTTGTAAACAAC
* * * *
13920 TTTTGGTCTTTGAATTAAAAACTTATTTACTTGAAAATTATTTCT-T-TTAGTTCTTGGACGAAC
1 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTTTTTCTCTCTTGGTTCTTGGACGAAC
* * *
13983 TTTCAAACTTGTCAAACATTTACGAGTTCTTTTTTAA-TGTTGGTTCCTGAGAGTATTCAAGATG
66 TTTCAAACTTGTCAAACATTTACGAGTTCTTTTATAACT-TCGGTTCCTGAGAGTATTCAAGACG
* * * * *
14047 ATCCATTCCTTCGACCAATTTTTTAAACATTTCATGCTCGGGAAATCCCATCATTTGGTC-AAAT
130 ACCCATTCCTTCGAGCAATTTTTTGAACATTTCATGCTCGAGAAATCACATCATTTGGTCTAAAT
* *
14111 TGTTTCTCATTTTGTAAACAAC
195 AGTTTGTCATTTTGTAAACAAC
** * * * *
14133 TTTTTCTCTTTGAATTAAAAACTTATTTACGTGAGAGTTTTTTCGCTCTTGGTTCTTAGACAAAC
1 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTTTTTCTCTCTTGGTTCTTGGACGAAC
* * * *
14198 TTTCAAACTTCTCAAACATTTACGAGTTCTTTTATAACTTGGGTTCCTAAGAGTATTCAACACGA
66 TTTCAAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGA
* * * ** ** *
14263 CCCATTCCTTCGACCAATTTTTCGAACATTTCATTCTCGAGAAATTGCATCATTTGACCAAAATA
131 CCCATTCCTTCGAGCAATTTTTTGAACATTTCATGCTCGAGAAATCACATCATTTGGTCTAAATA
*
14328 ATTT-TCATTTTGTAAACAAC
196 GTTTGTCATTTTGTAAACAAC
* * * * * * *
14348 TTTTTGTCTTTAAATTAAAAACCTATTTATGTGAGAATTGTTTCTCTCTTGGATGTTGGACGAAC
1 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTTTTTCTCTCTTGGTTCTTGGACGAAC
* * * ** * * *
14413 TTTCAAACTTGTCAAACATTTATGATTTCTTTAATAACTTCAATTACTGAGTGTATTCAAGATGA
66 TTTCAAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGA
* * * ** * *
14478 CCCACTCCTTCGAGCAATTTTTTAAACATTCCATTAT-GGGAAATCAAATCATTTGGTCTAAATA
131 CCCATTCCTTCGAGCAATTTTTTGAACATTTCATGCTCGAGAAATCACATCATTTGGTCTAAATA
*
14542 GTTTGTCATTTTGTAAATAAC
196 GTTTGTCATTTTGTAAACAAC
* * * *
14563 TTTTGGTCATTGTATTAGAAACTTATTTACGTGAGAAGTTTTTCTCTCTTGGTTCTTGGACGAAC
1 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTTTTTCTCTCTTGGTTCTTGGACGAAC
* * * * * *
14628 TTCCAAACTAGTCAAACATTTATGAGTTCTTTTATAACTTCGGTTACTGAGAGGATTGAAGACGA
66 TTTCAAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGA
**
14693 CCCATTCCTTCGAGCAATTTTTTGAACATTTCATTTTCGAGAAATCACATC
131 CCCATTCCTTCGAGCAATTTTTTGAACATTTCATGCTCGAGAAATCACATC
14744 TTTAAATAGT
Statistics
Matches: 1038, Mismatches: 192, Indels: 41
0.82 0.15 0.03
Matches are distributed among these distances:
210 3 0.00
211 82 0.08
212 24 0.02
213 155 0.15
214 172 0.17
215 452 0.44
216 145 0.14
217 5 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (216 bp):
TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTTTTTCTCTCTTGGTTCTTGGACGAAC
TTTCAAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGA
CCCATTCCTTCGAGCAATTTTTTGAACATTTCATGCTCGAGAAATCACATCATTTGGTCTAAATA
GTTTGTCATTTTGTAAACAAC
Found at i:17162 original size:217 final size:217
Alignment explanation
Indices: 16348--17302 Score: 973
Period size: 218 Copynumber: 4.4 Consensus size: 217
16338 AATTTATTTA
* * * *
16348 TGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTAGTAAAAAATTTACGAGTTATTTTATAAC
1 TGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTAAAACATTTACGAGTTCTTTTATAAC
** * * * * * * *
16413 TTCGGTTCCTGGGAATATGCAAGACGATCCATTCCTTCAAAAAAAATTTCGG-ACATTCCTTGCT
66 TTCGGTTCCTAAGACTATTCAAGATGATCCATTCCTTC-GACAAATTTTCGGAACATTCCATGCT
* * * *
16477 CAGGAAATCGCATCATCTGGTCTAAATAGTTTGTCATTTTGTAAAAAAAACTTTT-TTTCTTTGA
130 CAGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGT--AAACAACTTTTGGTTCTTTGA
*
16541 ATTAAATACTTATTTA-AGTGAGAAT
193 ATTAAAAACTTATTTACA-TGAGAAT
* * * * *
16566 TGTTTCTCTCTTGGCTCTTGGATGAACATT-TGAACTTGTCAAACATTTACAAGTTCTTTTATAA
1 TGTTTCTCTCTTGGTTCTTGGACGAAC-TTCCGAACTTGTAAAACATTTACGAGTTCTTTTATAA
** * * * * * *
16630 CTTTTGTTCGTAAGATTATTAAAGATGATCCAATCCTTAGACCAATTTTTC-GAACATTCCATGC
65 CTTCGGTTCCTAAGACTATTCAAGATGATCCATTCCTTCGA-CAAATTTTCGGAACATTCCATGC
* * *
16694 TC-GGAAAATCACATCATTTGGTC-AAATTGTTTGTCATTTTGTAAACAACTTTTGGTGC-ATGA
129 TCAGG-AAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTTCTTTGA
* * *
16756 AATAAAAATTTATTTACGTGAGAAT
193 ATTAAAAACTTATTTACATGAGAAT
* * * * *
16781 TGCTTCCCTCTTGGTTCTTGGATGAACTTCCGAACTT-T---TC--TAACGAGTTCTTTTATAAC
1 TGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTAAAACATTTACGAGTTCTTTTATAAC
* * * * * * *
16840 TTCAGTTCTTAAGAGTATTCAAGAAGATCAATTCCTTTGACAAATTTTCTGAACATTCCATGCTC
66 TTCGGTTCCTAAGACTATTCAAGATGATCCATTCCTTCGACAAATTTTCGGAACATTCCATGCTC
** *
16905 AGGAAATCGTATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAACTTTTGGTT-TTTGAATT
131 AGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTTCTTTGAATT
16969 AAAAACTTATTTACATGAGAAT
196 AAAAACTTATTTACATGAGAAT
* *
16991 TGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTAAAACATTTATGAGTTCTTTTTATAA
1 TGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTAAAACATTTACGAGTTC-TTTTATAA
* * * * *
17056 CTTCGGTTCCTAAGACTATTCAAGGTGATCCATTCCTTCGAGCTATTTTTC-GATCATTCCATTC
65 CTTCGGTTCCTAAGACTATTCAAGATGATCCATTCCTTCGA-CAAATTTTCGGAACATTCCATGC
* * ** *
17120 TC-GAGAAATCACATCATTTGGTCTAAATAGTTTCTTATTTTGTAAACAACTTTTTTTTCTTTGT
129 TCAG-GAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTTCTTTGA
*
17184 ATTAAAAACTTATTTACGTGAGAAT
193 ATTAAAAACTTATTTACATGAGAAT
* * * * * * * * * *
17209 T-TTTATCTCTT-ATTCTTGGACGAAATTACAAACTAGTTAAACTTTTA-GAGTTCTTTTATTAT
1 TGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTAAAACATTTACGAGTTCTTTTATAAC
17271 TTCGGTTCCTTAA-AGC-ATTCAAGATGATCCAT
66 TTCGGTTCC-TAAGA-CTATTCAAGATGATCCAT
17303 CCATTTGAGC
Statistics
Matches: 616, Mismatches: 98, Indels: 50
0.81 0.13 0.07
Matches are distributed among these distances:
208 8 0.01
209 79 0.13
210 91 0.15
211 2 0.00
214 36 0.06
215 73 0.12
216 39 0.06
217 134 0.22
218 152 0.25
219 2 0.00
ACGTcount: A:0.29, C:0.16, G:0.14, T:0.41
Consensus pattern (217 bp):
TGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTAAAACATTTACGAGTTCTTTTATAAC
TTCGGTTCCTAAGACTATTCAAGATGATCCATTCCTTCGACAAATTTTCGGAACATTCCATGCTC
AGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTTCTTTGAATT
AAAAACTTATTTACATGAGAAT
Found at i:17754 original size:216 final size:215
Alignment explanation
Indices: 17346--19446 Score: 2231
Period size: 216 Copynumber: 9.8 Consensus size: 215
17336 GAGATACCGC
* * * * * *
17346 ATAA-TTTGGTTCCTGAGTGTATTCAAGACGATCTATTCCTTCAACCAACTTTTTGAACATTCCA
1 ATAACTTTGATTCCTGAGAGTATTCAAGATGATCCATTCCTTCGACCAATTTTTTGAACATTCCA
* * * * *
17410 TTCTTGGGAAATCGCATCATTTGGTCAAAATAGTTTGTCATTTTGTAGACAACTTTTGGTCTTTA
66 TGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTG
* * * * * *
17475 AATTAAAAACTTGTTTAAGTGAGAATTGTTTCTCTCTTGGTTGTTGGGCAAACTTCCGAACTTGT
131 AATTAAAAACTTATTT-ACTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGT
* *
17540 CAAACATTTGCGATTTCTTTT
195 CAAACATTTACGAGTTCTTTT
* * ** * * **
17561 ATAACTTTGATTACTGAGTGTATTTTAGATGACCCATTCCTTCTAGTAATTTTTTGAACATTCCA
1 ATAACTTTGATTCCTGAGAGTATTCAAGATGATCCATTCCTTCGACCAATTTTTTGAACATTCCA
**
17626 TTATCGGGAAAT-GACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTT
66 TGCTCGGGAAATCG-CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTT
* * * * *
17690 GTATTAAAAACTTATTTACTAAAGAAGTT-TTTCTCTCATAGTTATTGGACGAACTTCTGAACTT
130 GAATTAAAAACTTATTTACT-GAGAA-TTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTT
* * *
17754 GTTAAATATTTACAAGTTCTTTT
193 GTCAAACATTTACGAGTTCTTTT
* * * ** * *
17777 ATAACTTTGGTTTCTAAGAGTATTCAAGACCATCCATTCCTTCGACAAATTTTTCGAACATTCCA
1 ATAACTTTGATTCCTGAGAGTATTCAAGATGATCCATTCCTTCGACCAATTTTTTGAACATTCCA
** * * *
17842 TGCTCGAAAAATTGCATCATTTGGTCTAAAATAGTTTGTCATTTTGTAAACAATTTTTGGCCTTT
66 TGCTCGGGAAATCGCATCATTTGGTCT-AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTT
* * *
17907 GAATTAAAAATTTTATATACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTT
130 GAATTAAAAA-CTTATTTAC-TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTT
* *
17972 GTCAAATATTTATGAGTTCTTTT
193 GTCAAACATTTACGAGTTCTTTT
* * * * *
17995 ATAAC-TTCAGCTCGT-ATGATTATTCAAGACGATCCATTCCTTCGACCAATTTTTTGAACATTC
1 ATAACTTTGA-TTCCTGA-GAGTATTCAAGATGATCCATTCCTTCGACCAATTTTTTGAACATTC
* * * *
18058 CGTTCTCGGGAAATCGCATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAACTTTTGGCCTT
64 CATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTT
* * * * * *
18123 TGTATTAAAAACTTATTTATGTGAGAATT-TTCTCTCTCTT-GTTCTTCGACAAACTAAC-AAAC
129 TGAATTAAAAACTTATTTA-CTGAGAATTGTT-TCTCTCTTGGTTCTTGGACGAACT-TCTGAAC
* * *
18185 TAGTCAAACTTTTATGAGTTCTTTT
191 TTGTCAAACATTTACGAGTTCTTTT
* * * * * * * *
18210 ATAACTTTGATTCCTTAAAGTATGCAAGACGATCCA-TCTCTTTGAGCAATTTTTCGAACATTCA
1 ATAACTTTGATTCCTGAGAGTATTCAAGATGATCCATTC-CTTCGACCAATTTTTTGAACATTCC
* * *
18274 ATGCTCGAGAAATCGCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAACTTTTGGTCTT
65 ATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT-AAACAACTTTTGGTCTT
*
18339 TGAA-TAAAAACTTATTTACATTG-GAATTGTTTCTCTCTTGGTTTTTGGACGAACTT-TCGAAC
129 TGAATTAAAAACTTATTTAC--TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCT-GAAC
* *
18401 TTGTTAAACATTTACGAGTTCTTCT
191 TTGTCAAACATTTACGAGTTCTTTT
* * * * * *
18426 GTTAC-TCGATTCCTGAGAGTATTCAACATGATCCATTCCTTCGACCAATTTTCTGAACATTTCA
1 ATAACTTTGATTCCTGAGAGTATTCAAGATGATCCATTCCTTCGACCAATTTTTTGAACATTCCA
* * *
18490 AGCTCGGGAAATCGCATCATTTGGTC-AAATTGTTTGTCATTTTGTAAA-AAATTTTGGTCTTTG
66 TGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTG
** * *
18553 AATTAAAAACTTATTTACGTGAGAATTGTTTGGCTCTTTGTTCTTGGACGAACTTCTGAACTTTT
131 AATTAAAAACTTATTTAC-TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGT
* *
18618 CTAACATTTATGAGTTCTTTT
195 CAAACATTTACGAGTTCTTTT
* * * * * * ** *
18639 ATAACTTCGGTTCTTGAGAGTATTCAAGAAGATCAATTCCTTCGACAAATTTTCCGAACATTTCA
1 ATAACTTTGATTCCTGAGAGTATTCAAGATGATCCATTCCTTCGACCAATTTTTTGAACATTCCA
* *
18704 TTCTCGGGAAATCGCATCATTTGGT-TAAAATAGTTTATCATTTTGTAAACAACTTTTGGTCTTT
66 TGCTCGGGAAATCGCATCATTTGGTCT-AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTT
* * *
18768 GAATTAAAAATTTATTTACATGAGAATTGTTTCTATCTTGGTTGTTGGACGAACTTCTGAACTTG
130 GAATTAAAAACTTATTTAC-TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTG
* *
18833 TTAAAACA-TTACAAGTTCTTTT
194 -TCAAACATTTACGAGTTCTTTT
* * * * * *
18855 ATAAC-TTCAGTTCCTAAGAGTATTCAAGATGACCCATTCCTTCGAGCTA-TTTTTCAATCATTC
1 ATAACTTTGA-TTCCTGAGAGTATTCAAGATGATCCATTCCTTCGACCAATTTTTTGAA-CATTC
* * * * *
18918 CATTCTCGGGCAATCACATCATTTGGTCTAAATAGTTTCTCATTTTGTAAACAACTTTTTGTCTT
64 CATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTT
* * *
18983 TGTATTAAAAACTTATTTACGTGAGAATT-TTTATCTCTT-GTTCTTGGACGAAATTAC-GAACT
129 TGAATTAAAAACTTATTTAC-TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT-CTGAACT
* *
19045 AGTCAAACTTTTACGAGTTCTTTT
192 TGTCAAACATTTACGAGTTCTTTT
* * * * * * * ** *
19069 ATTA-TTTCGGTTCCTTAAAGCATTCAAGATGATCCA-TCCATTTGAGCAATTTTCAGAACTTTC
1 ATAACTTT-GATTCCTGAGAGTATTCAAGATGATCCATTCC-TTCGACCAATTTTTTGAACATTC
* * * * *
19132 CATGCTCGAGAAACCGCATAATTTGGTCTACATAGTTTGTCATTTTGTAAACAACTTTTTGTCTT
64 CATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTT
* * *
19197 TGAATTAAAAACTTATTTACTTGAGAATTGTTTCCCCCTTAGTTCTTGGACGAACTT-TCGAACT
129 TGAATTAAAAACTTATTTAC-TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCT-GAACT
* * *
19261 TGTCAAACATTTTCAAGCTCTTTT
192 TGTCAAACATTTACGAGTTCTTTT
* * * * * *
19285 ATAA-TGTCGGTTCCTGAGAGTATTCAAGATGATTCATTCCTTGGACCAATTTTCTGAACATTTC
1 ATAACT-TTGATTCCTGAGAGTATTCAAGATGATCCATTCCTTCGACCAATTTTTTGAACATTCC
* * * * * * *
19349 ATGCTCGAGAAATCCCATCATTTGGTC-AAATTGTTTATCATTTGGTAAACAAATTTAGGTCTTT
65 ATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTT
19413 GAATTAAAAACTTATTTACGTGAGAATTGTTTCT
130 GAATTAAAAACTTATTTAC-TGAGAATTGTTTCT
19447 AATAAAAACA
Statistics
Matches: 1581, Mismatches: 257, Indels: 96
0.82 0.13 0.05
Matches are distributed among these distances:
212 18 0.01
213 82 0.05
214 251 0.16
215 337 0.21
216 651 0.41
217 107 0.07
218 134 0.08
219 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (215 bp):
ATAACTTTGATTCCTGAGAGTATTCAAGATGATCCATTCCTTCGACCAATTTTTTGAACATTCCA
TGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTG
AATTAAAAACTTATTTACTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTC
AAACATTTACGAGTTCTTTT
Found at i:19158 original size:430 final size:431
Alignment explanation
Indices: 17346--19446 Score: 2350
Period size: 430 Copynumber: 4.9 Consensus size: 431
17336 GAGATACCGC
* ** * * *
17346 ATAA-TTTGGTTCCTGAGTGTATTCAAGACGATCTATTCCTTCAACCAACTTTTT-GAACATTCC
1 ATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA-CAAATTTTTCGAACATTCC
* * * *
17409 ATTCTTGGGAAATCGCATCATTTGGTC-AAAATAGTTTGTCATTTTGTAGACAACTTTTGGTCTT
65 ATGCTCGAGAAATCGCATCATTTGGTCTAAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTT
* * * * * *
17473 TAAATTAAAAACTTGTTTA-AGTGAGAATTGTTTCTCTCTTGGTTGTTGGGCAAACTTCCGAACT
130 TGAATTAAAAACTTATTTACA-TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACT
* * * * * * ** *
17537 TG-TCAAACATTTGCGATTTCTTTTATAACTT-TGATTACTGAGTGTATTTTAGATGACCCATTC
194 TGTTAAAACATTTACGAGTTCTTTTATAACTTCAG-TTCCTGAGAGTATTCAAGATGATCCATTC
* ** * *
17600 CTTCTAGTAATTTTTTGAACATTCCATTATCGGGAAATGACATCATTTGGTCTAAATAGTTTGTC
258 CTTCGACCAA-TTTTTGAACATTCCATTCTCGGGAAATCACATCATTTGGTC-AAATAGTTTGTC
*
17665 ATTTTGTAAACAACTTTTGGTCTTTGTATTAAAAACTTATTTAC-TAAAGAAGTTTTTCTCTCAT
321 ATTTTGTAAACAACTTTTGGTCTTTGTATTAAAAACTTATTTACGT-GAGAA-TTTTTCTCTCAT
* * * * * *
17729 AGTTATTGGACGAACTTCTGAACTTGTTAAA-TATTTACAAGTTCTTTT
384 TGTTCTTGGACGAAATTCTGAACTAGTCAAACT-TTTACGAGTTCTTTT
* *
17777 ATAACTTTGGTTTC-TAAGAGTATTCAAGACCATCCATTCCTTCGACAAATTTTTCGAACATTCC
1 ATAACTTTGGTTCCTTAA-AGTATTCAAGACGATCCATTCCTTCGACAAATTTTTCGAACATTCC
* * * *
17841 ATGCTCGAAAAATTGCATCATTTGGTCTAAAATAGTTTGTCATTTTGTAAACAATTTTTGGCCTT
65 ATGCTCGAGAAATCGCATCATTTGGTCTAAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTT
* * * *
17906 TGAATTAAAAATTTTATATACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACT
130 TGAATTAAAAA-CTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACT
* * * * * * *
17971 TG-TCAAATATTTATGAGTTCTTTTATAACTTCAGCTCGT-ATGATTATTCAAGACGATCCATTC
194 TGTTAAAACATTTACGAGTTCTTTTATAACTTCAGTTCCTGA-GAGTATTCAAGATGATCCATTC
* *
18034 CTTCGACCAATTTTTTGAACATTCCGTTCTCGGGAAATCGCATCATTTGGTCAAAATAGTTTGTC
258 CTTCGACCAA-TTTTTGAACATTCCATTCTCGGGAAATCACATCATTTGGTC-AAATAGTTTGTC
* *
18099 ATTTTGTAAACAACTTTTGGCCTTTGTATTAAAAACTTATTTATGTGAGAATTTTCTCTCTC-TT
321 ATTTTGTAAACAACTTTTGGTCTTTGTATTAAAAACTTATTTACGTGAGAATTTT-TCTCTCATT
* * * *
18163 GTTCTTCGAC-AAACTAAC-AAACTAGTCAAACTTTTATGAGTTCTTTT
385 GTTCTTGGACGAAA-T-TCTGAACTAGTCAAACTTTTACGAGTTCTTTT
* * *
18210 ATAACTTTGATTCCTTAAAGTATGCAAGACGATCCA-TCTCTTTGAGC-AATTTTTCGAACATTC
1 ATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTC-CTTCGA-CAAATTTTTCGAACATTC
* * *
18273 AATGCTCGAGAAATCGCATAATTTGGTCT-AAATAGTTTGTCATTTTGTAAAAAAACTTTTGGTC
64 CATGCTCGAGAAATCGCATCATTTGGTCTAAAATAGTTTGTCATTTTGT-AAACAACTTTTGGTC
*
18337 TTTGAA-TAAAAACTTATTTACATTG-GAATTGTTTCTCTCTTGGTTTTTGGACGAACTT-TCGA
128 TTTGAATTAAAAACTTATTTACA-TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCT-GA
* * * *
18399 ACTTGTT-AAACATTTACGAGTTCTTCTGTTAC-TC-GATTCCTGAGAGTATTCAACATGATCCA
191 ACTTGTTAAAACATTTACGAGTTCTTTTATAACTTCAG-TTCCTGAGAGTATTCAAGATGATCCA
* ** * *
18461 TTCCTTCGACCAATTTTCTGAACATTTCAAGCTCGGGAAATCGCATCATTTGGTCAAATTGTTTG
255 TTCCTTCGACCAATTTT-TGAACATTCCATTCTCGGGAAATCACATCATTTGGTCAAATAGTTTG
* * ** *
18526 TCATTTTGTAAA-AAATTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTGGCTCT
319 TCATTTTGTAAACAACTTTTGGTCTTTGTATTAAAAACTTATTTACGTGAGAATT-TTTCTCTCA
* ** * * *
18590 TTGTTCTTGGACGAACTTCTGAACTTTTCTAACATTTATGAGTTCTTTT
383 TTGTTCTTGGACGAAATTCTGAACTAGTCAAACTTTTACGAGTTCTTTT
* * * * * *
18639 ATAACTTCGGTT-CTTGAGAGTATTCAAGAAGATCAATTCCTTCGACAAATTTTCCGAACATTTC
1 ATAACTTTGGTTCCTT-AAAGTATTCAAGACGATCCATTCCTTCGACAAATTTTTCGAACATTCC
* * *
18703 ATTCTCGGGAAATCGCATCATTTGGT-TAAAATAGTTTATCATTTTGTAAACAACTTTTGGTCTT
65 ATGCTCGAGAAATCGCATCATTTGGTCTAAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTT
* * *
18767 TGAATTAAAAATTTATTTACATGAGAATTGTTTCTATCTTGGTTGTTGGACGAACTTCTGAACTT
130 TGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTT
* * *
18832 GTTAAAACA-TTACAAGTTCTTTTATAACTTCAGTTCCTAAGAGTATTCAAGATGACCCATTCCT
195 GTTAAAACATTTACGAGTTCTTTTATAACTTCAGTTCCTGAGAGTATTCAAGATGATCCATTCCT
* * * * *
18896 TCGAGCTATTTTTCAATCATTCCATTCTCGGGCAATCACATCATTTGGTCTAAATAGTTTCTCAT
260 TCGACCAATTTTTGAA-CATTCCATTCTCGGGAAATCACATCATTTGGTC-AAATAGTTTGTCAT
* *
18961 TTTGTAAACAACTTTTTGTCTTTGTATTAAAAACTTATTTACGTGAGAATTTTTATCTC-TTGTT
323 TTTGTAAACAACTTTTGGTCTTTGTATTAAAAACTTATTTACGTGAGAATTTTTCTCTCATTGTT
19025 CTTGGACGAAATTAC-GAACTAGTCAAACTTTTACGAGTTCTTTT
388 CTTGGACGAAATT-CTGAACTAGTCAAACTTTTACGAGTTCTTTT
* * * * *
19069 ATTA-TTTCGGTTCCTTAAAGCATTCAAGATGATCCA-TCCATTTGAGC-AA-TTTTCAGAACTT
1 ATAACTTT-GGTTCCTTAAAGTATTCAAGACGATCCATTCC-TTCGA-CAAATTTTTC-GAACAT
* * * *
19130 TCCATGCTCGAGAAACCGCATAATTTGGTCT-ACATAGTTTGTCATTTTGTAAACAACTTTTTGT
62 TCCATGCTCGAGAAATCGCATCATTTGGTCTAAAATAGTTTGTCATTTTGTAAACAACTTTTGGT
* * * *
19194 CTTTGAATTAAAAACTTATTTACTTGAGAATTGTTTCCCCCTTAGTTCTTGGACGAACTT-TCGA
127 CTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCT-GA
* * * * * *
19258 ACTTG-TCAAACATTTTCAAGCTCTTTTATAA-TGTCGGTTCCTGAGAGTATTCAAGATGATTCA
191 ACTTGTTAAAACATTTACGAGTTCTTTTATAACT-TCAGTTCCTGAGAGTATTCAAGATGATCCA
* * * * * * *
19321 TTCCTTGGACCAATTTTCTGAACATTTCATGCTCGAGAAATCCCATCATTTGGTCAAATTGTTTA
255 TTCCTTCGACCAATTTT-TGAACATTCCATTCTCGGGAAATCACATCATTTGGTCAAATAGTTTG
* * * *
19386 TCATTTGGTAAACAAATTTAGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCT
319 TCATTTTGTAAACAACTTTTGGTCTTTGTATTAAAAACTTATTTACGTGAGAATT-TTTCT
19447 AATAAAAACA
Statistics
Matches: 1419, Mismatches: 199, Indels: 105
0.82 0.12 0.06
Matches are distributed among these distances:
428 70 0.05
429 298 0.21
430 422 0.30
431 116 0.08
432 133 0.09
433 173 0.12
434 205 0.14
435 2 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (431 bp):
ATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGACAAATTTTTCGAACATTCCA
TGCTCGAGAAATCGCATCATTTGGTCTAAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTT
GAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTG
TTAAAACATTTACGAGTTCTTTTATAACTTCAGTTCCTGAGAGTATTCAAGATGATCCATTCCTT
CGACCAATTTTTGAACATTCCATTCTCGGGAAATCACATCATTTGGTCAAATAGTTTGTCATTTT
GTAAACAACTTTTGGTCTTTGTATTAAAAACTTATTTACGTGAGAATTTTTCTCTCATTGTTCTT
GGACGAAATTCTGAACTAGTCAAACTTTTACGAGTTCTTTT
Found at i:20260 original size:31 final size:31
Alignment explanation
Indices: 20198--20265 Score: 75
Period size: 31 Copynumber: 2.2 Consensus size: 31
20188 TTCAGTTTAA
** *
20198 TAAGTGTTTGCATCTTTAATTTTGTCTTGCAT
1 TAAGTGTTTGCA-CTTTAATTAAGTCATGCAT
20230 TAAGTGTTTTGCA-TTTAATTAAGTCATGCAT
1 TAAGTG-TTTGCACTTTAATTAAGTCATGCAT
*
20261 AAAGT
1 TAAGT
20266 TGTGTTTTTC
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
31 19 0.61
32 6 0.19
33 6 0.19
ACGTcount: A:0.26, C:0.10, G:0.16, T:0.47
Consensus pattern (31 bp):
TAAGTGTTTGCACTTTAATTAAGTCATGCAT
Found at i:20388 original size:48 final size:48
Alignment explanation
Indices: 20336--20467 Score: 219
Period size: 48 Copynumber: 2.8 Consensus size: 48
20326 TAATTATGCT
*
20336 TCATTAAGTGTTTTGTTTGTTAAATGCATCTTTGTTTAATAATCTGCA
1 TCATTAAGTGTTTTGTTTGTTAAATGCATCTTTGTTTAATAATCTACA
* *
20384 TCATTAAGTGTTTTGTTTGTTAAATGCATCTTTATTTAGTAATCTACA
1 TCATTAAGTGTTTTGTTTGTTAAATGCATCTTTGTTTAATAATCTACA
* *
20432 TTATTAAATGTTTTGTTTGTTAAATGCATCTTTGTT
1 TCATTAAGTGTTTTGTTTGTTAAATGCATCTTTGTT
20468 AAATGCCTTG
Statistics
Matches: 78, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 78 1.00
ACGTcount: A:0.25, C:0.09, G:0.14, T:0.52
Consensus pattern (48 bp):
TCATTAAGTGTTTTGTTTGTTAAATGCATCTTTGTTTAATAATCTACA
Found at i:21001 original size:80 final size:78
Alignment explanation
Indices: 20883--21041 Score: 264
Period size: 80 Copynumber: 2.0 Consensus size: 78
20873 CAACCAATAA
* *
20883 ACACATTAAGGTTACATAAGTCTTCATTAAGGAGAAATGTCATGTCTTTTCAGCTACATCAGATC
1 ACACATTAAGGATACATAAGTCTTCATTAAGGAGAAATGTCATGTCTTTTCAACTACATCAGATC
*
20948 ATAATGAAGAGAC
66 ACAATGAAGAGAC
20961 ACACATTAAGGATACAATAAGTCTTCATTTAAGGAGAAATGTCATGTCTTTTCAACTACATCAGA
1 ACACATTAAGGATAC-ATAAGTCTTCA-TTAAGGAGAAATGTCATGTCTTTTCAACTACATCAGA
*
21026 TCCCAATGAAGAGAC
64 TCACAATGAAGAGAC
21041 A
1 A
21042 TGATTCATTA
Statistics
Matches: 75, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
78 14 0.19
79 11 0.15
80 50 0.67
ACGTcount: A:0.38, C:0.18, G:0.16, T:0.28
Consensus pattern (78 bp):
ACACATTAAGGATACATAAGTCTTCATTAAGGAGAAATGTCATGTCTTTTCAACTACATCAGATC
ACAATGAAGAGAC
Found at i:25221 original size:10 final size:9
Alignment explanation
Indices: 25208--25232 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
25198 AAAATACGAG
25208 AAAAATAAA
1 AAAAATAAA
25217 AAAAATAAA
1 AAAAATAAA
25226 AAAAATA
1 AAAAATA
25233 TTCTATGGGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (9 bp):
AAAAATAAA
Done.