Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007853.1 Kokia drynarioides strain JFW-HI SEQ_122492, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7436
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.35


Found at i:2579 original size:104 final size:103

Alignment explanation


    Indices: 2320--2608  Score: 273
    Period size: 103  Copynumber: 2.8  Consensus size: 103

       2310 AATTCTACCA

                                *     * *                    *   * *        *
       2320 AAAAAAAAAATCATACCCAACACGTTAGGGCACAATTCTT-CGAAGTTTTC-ACACAAA-AAGAT
          1 AAAAAAAAAATCATACCCAATACGTTTGAGCACAATT-TTCCGAA-TTTCCTAAATAAAGAA-AC

               *    **                  *    *   *   
       2382 ATTGCCTCAATTTTAAAATAGGATATTCGATTATTTATGTC
         63 ATTACCTCGTTTTTAAAATAGGATATTCAATTACTTAGGTC

            *   *                            *     *   *                     
       2423 CAAAGAAAAATCATACCCAATACGTTTGAGCACTATTTTTCGAGTTTCCTAAATAAAGAAACATT
          1 AAAAAAAAAATCATACCCAATACGTTTGAGCACAATTTTCCGAATTTCCTAAATAAAGAAACATT

                       *                           
       2488 ACCTCGTTTTTCAAATAGGATATTCAATTACTTAGGTTC
         66 ACCTCGTTTTTAAAATAGGATATTCAATTACTTAGG-TC

                            *                                          *     
       2527 AAAAAAAAAATCATACTCAATACGTTTGAGCACAATTTTCCGAA-TTCTCTAAA-ACAAAAGAAC
          1 AAAAAAAAAATCATACCCAATACGTTTGAGCACAATTTTCCGAATTTC-CTAAATA-AAGA-AAC

               *     *         
       2590 ATTGCCTCGATTTTAAAAT
         63 ATTACCTCGTTTTTAAAAT

       2609 TTTTAATTCT


Statistics
Matches: 151,  Mismatches: 28, Indels: 12
        0.79            0.15        0.06

Matches are distributed among these distances:
 102    6  0.04
 103   76  0.50
 104   50  0.33
 105   19  0.13

ACGTcount: A:0.40, C:0.18, G:0.11, T:0.31


Consensus pattern (103 bp):   
AAAAAAAAAATCATACCCAATACGTTTGAGCACAATTTTCCGAATTTCCTAAATAAAGAAACATT
ACCTCGTTTTTAAAATAGGATATTCAATTACTTAGGTC
Done.