Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007854.1 Kokia drynarioides strain JFW-HI SEQ_122493, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 15966
ACGTcount: A:0.37, C:0.15, G:0.14, T:0.35


Found at i:531 original size:16 final size:16

Alignment explanation


    Indices: 505--543  Score: 55
    Period size: 16  Copynumber: 2.5  Consensus size: 16

        495 ATGAATTCAA

                            
        505 ATAATTTTAAAT-TTT
          1 ATAATTTTAAATATTT

                             
        520 ATAATTTATAAATATTT
          1 ATAATTT-TAAATATTT

                    
        537 -TAATTTT
          1 ATAATTTT

        544 GATGTAATAA


Statistics
Matches: 22,  Mismatches: 0, Indels: 4
        0.85            0.00        0.15

Matches are distributed among these distances:
  15    8  0.36
  16   11  0.50
  17    3  0.14

ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59


Consensus pattern (16 bp):   
ATAATTTTAAATATTT

Found at i:5098 original size:14 final size:16

Alignment explanation


    Indices: 5066--5102  Score: 51
    Period size: 14  Copynumber: 2.4  Consensus size: 16

       5056 ACATTAGAAC

                             
       5066 TAAATAAAATATTTGAA
          1 TAAAT-AAATATTTGAA

                            
       5083 TAAATAAAT-TTT-AA
          1 TAAATAAATATTTGAA

                  
       5097 TAAATA
          1 TAAATA

       5103 TGGAACTGTA


Statistics
Matches: 20,  Mismatches: 0, Indels: 3
        0.87            0.00        0.13

Matches are distributed among these distances:
  14    8  0.40
  15    3  0.15
  16    4  0.20
  17    5  0.25

ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38


Consensus pattern (16 bp):   
TAAATAAATATTTGAA

Found at i:9392 original size:15 final size:16

Alignment explanation


    Indices: 9372--9407  Score: 56
    Period size: 15  Copynumber: 2.3  Consensus size: 16

       9362 AATCATTTAA

                            
       9372 AAAATATAAAAAT-AT
          1 AAAATATAAAAATAAT

                   *        
       9387 AAAATATTAAAATAAT
          1 AAAATATAAAAATAAT

                 
       9403 AAAAT
          1 AAAAT

       9408 TATATTTTTA


Statistics
Matches: 19,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  15   12  0.63
  16    7  0.37

ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28


Consensus pattern (16 bp):   
AAAATATAAAAATAAT
Done.