genome.fa.s7857.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01007857.1 Kokia drynarioides strain JFW-HI SEQ_122496, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  147065

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3530--3564	19	1.9	18	88	11	54	45	5	8	40	1.58
3879--3925	20	2.3	20	89	7	69	12	2	2	82	0.84
3887--3925	6	6.2	6	88	5	51	12	0	2	84	0.72
3879--3925	7	7.0	7	81	16	55	12	2	2	82	0.84
3879--3925	13	3.5	13	80	13	60	12	2	2	82	0.84
9919--9966	11	4.4	11	81	0	60	54	0	27	18	1.44
18483--18548	28	2.4	29	82	7	75	53	6	0	40	1.26
20291--20377	33	2.6	33	81	3	95	21	18	25	34	1.96
25053--25372	174	1.8	174	82	5	414	29	35	10	25	1.88
29049--29078	4	7.2	4	92	7	51	73	3	0	23	0.98
30987--31093	54	2.0	54	85	7	146	25	16	24	33	1.96
31868--32010	63	2.3	63	95	0	259	34	18	16	30	1.93
32783--32849	33	2.0	33	88	0	98	26	14	31	26	1.95
32794--32864	33	2.2	33	81	0	79	28	15	29	26	1.96
37044--37362	174	1.8	174	80	4	383	31	34	9	24	1.88
39666--40162	242	2.1	242	98	0	967	34	15	5	44	1.69
42810--43018	82	2.6	81	74	8	210	44	8	2	44	1.47
47229--47285	23	2.5	23	88	0	69	43	22	10	22	1.84
47246--47290	23	2.0	23	95	0	81	40	24	13	22	1.90
49014--49048	17	2.1	17	89	5	54	57	0	2	40	1.14
52590--52779	102	1.9	102	91	2	310	24	35	17	22	1.95
56072--56141	26	2.5	28	86	11	92	75	5	4	14	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56921--57154	117	2.0	117	98	0	450	29	24	16	29	1.97
62644--62680	18	2.1	19	90	10	60	51	0	0	48	1.00
62671--62707	19	1.9	19	89	10	58	35	0	8	56	1.29
64331--64558	41	5.5	41	81	2	240	37	11	25	25	1.89
67490--67529	20	2.0	21	85	5	55	35	0	10	55	1.34
74168--74208	21	2.0	21	90	9	66	31	12	2	53	1.51
78649--78677	2	14.5	2	100	0	58	48	0	0	51	1.00
80102--80154	23	2.3	23	80	3	63	47	1	7	43	1.42
80634--80669	16	2.2	17	90	5	56	44	0	2	52	1.15
80673--80824	29	5.2	28	74	20	132	32	29	3	34	1.76
80687--80824	30	4.7	29	75	20	126	33	29	3	33	1.75
80663--80863	59	3.4	58	88	4	285	33	29	3	33	1.76
80702--80883	30	6.1	30	73	14	119	31	30	3	34	1.76
83407--83452	23	2.0	24	86	4	67	36	0	2	60	1.09
83418--83503	19	4.2	20	78	14	79	36	0	4	59	1.18
84058--84123	32	2.1	32	94	0	114	25	24	7	42	1.81
88711--88765	28	2.0	28	81	0	65	49	3	3	43	1.37
105091--105133	22	2.0	22	90	9	70	32	4	13	48	1.63
110873--110942	35	2.0	34	84	13	90	15	22	2	58	1.50
117264--117316	27	2.0	27	100	0	106	35	0	7	56	1.28
117509--117554	23	2.0	23	83	8	58	65	4	4	26	1.30
120640--120678	20	2.0	20	94	0	69	33	10	12	43	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
120784--120820	18	2.0	20	89	10	60	43	0	0	56	0.99
123273--123342	23	3.0	23	87	2	104	28	12	17	41	1.86
123262--123336	12	6.2	12	71	10	55	28	14	14	42	1.85
127836--127919	43	2.0	43	87	0	123	34	14	13	38	1.85
130792--130899	54	2.0	54	98	0	207	34	10	11	44	1.74
138991--139113	60	2.1	58	81	6	140	21	13	14	49	1.78
139035--139115	27	2.9	26	72	18	65	20	13	14	50	1.77
140178--140212	17	2.1	16	89	5	52	51	0	5	42	1.25
140528--140562	17	2.0	17	88	5	52	68	8	0	22	1.16
140752--140791	21	1.9	21	90	10	64	57	12	2	27	1.48
140590--140874	10	30.2	9	65	21	72	59	7	2	30	1.38

Tables:   1

The End!