Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007859.1 Kokia drynarioides strain JFW-HI SEQ_122498, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13874
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:1882 original size:12 final size:12

Alignment explanation


    Indices: 1839--1885  Score: 51
    Period size: 12  Copynumber: 3.9  Consensus size: 12

       1829 TTAATTTATA

                         
       1839 AATATAAT-TTAT
          1 AATATAATATT-T

                  *     
       1851 AATATACTATTT
          1 AATATAATATTT

              **        
       1863 AACGTAATATTT
          1 AATATAATATTT

                       
       1875 AATATAATATT
          1 AATATAATATT

       1886 ATATTTCAAA


Statistics
Matches: 28,  Mismatches: 6, Indels: 2
        0.78            0.17        0.06

Matches are distributed among these distances:
  12   26  0.93
  13    2  0.07

ACGTcount: A:0.47, C:0.04, G:0.02, T:0.47


Consensus pattern (12 bp):   
AATATAATATTT

Found at i:9236 original size:12 final size:12

Alignment explanation


    Indices: 9219--9245  Score: 54
    Period size: 12  Copynumber: 2.2  Consensus size: 12

       9209 AAATCAATCT

                        
       9219 TATTTTTTTATA
          1 TATTTTTTTATA

                        
       9231 TATTTTTTTATA
          1 TATTTTTTTATA

               
       9243 TAT
          1 TAT

       9246 AGGCTTAAGC


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   15  1.00

ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74


Consensus pattern (12 bp):   
TATTTTTTTATA
Done.