genome.fa.s786.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01000786.1 Kokia drynarioides strain JFW-HI SEQ_111854, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  195308

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86--206	23	5.2	23	87	5	163	10	21	23	43	1.84
968--1261	114	2.5	116	84	4	328	35	18	19	26	1.95
980--1305	39	8.4	39	78	6	317	35	18	18	26	1.95
1011--1274	117	2.3	117	86	4	358	35	20	18	25	1.95
1860--2198	172	2.0	172	87	4	497	31	20	15	32	1.94
5085--5118	17	2.1	16	88	5	50	5	0	17	76	0.98
7195--7253	21	2.8	20	72	23	50	61	0	1	37	1.07
8025--8056	13	2.5	13	94	0	55	81	0	15	3	0.82
11386--11493	59	1.9	54	82	17	130	40	12	8	38	1.72
11915--12041	31	4.2	31	73	15	111	25	15	11	47	1.80
11915--12096	90	2.0	90	82	5	224	25	15	12	46	1.81
12265--12436	59	2.9	58	82	7	195	48	12	15	24	1.79
19449--19516	17	3.9	16	71	25	50	19	4	4	72	1.19
19476--19544	26	2.7	26	80	8	72	23	1	2	72	1.06
19476--19517	4	10.0	4	80	19	50	21	2	2	73	1.06
19476--19517	13	3.3	12	81	18	50	21	2	2	73	1.06
24047--24100	2	27.0	2	100	0	108	50	0	0	50	1.00
24680--24756	37	2.1	37	90	0	118	31	3	7	57	1.45
25821--26000	97	1.9	95	83	2	234	43	10	7	39	1.66
39181--39235	18	3.1	18	83	0	74	21	27	0	50	1.49
39181--39231	6	8.5	6	86	0	66	21	29	0	49	1.50
39381--39413	18	1.9	17	88	11	50	45	18	0	36	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53688--53734	25	1.9	25	87	12	71	17	19	0	63	1.30
58859--58951	46	2.0	46	100	0	186	39	6	17	36	1.75
63809--63883	22	3.5	21	75	15	73	37	32	13	17	1.88
63823--63885	22	2.9	21	86	13	92	31	31	17	19	1.95
74920--74959	19	2.1	19	95	0	71	27	15	22	35	1.94
75148--75471	171	1.9	171	82	3	411	30	23	11	34	1.90
87132--87287	82	1.9	82	92	2	260	31	25	19	23	1.98
87142--87508	181	2.0	184	86	4	519	30	25	21	22	1.99
92432--92698	62	4.4	61	85	6	366	34	16	20	29	1.94
92437--92666	117	2.0	117	89	2	356	31	17	22	28	1.97
92442--92680	116	2.1	117	86	2	329	33	17	20	28	1.96
95153--95192	21	1.9	21	89	0	62	30	5	10	55	1.54
96681--96711	7	4.4	7	91	0	53	22	0	0	77	0.77
100963--100990	7	4.0	7	100	0	56	57	28	14	0	1.38
101559--101599	20	2.1	19	86	4	55	41	0	2	56	1.13
101565--101620	29	2.0	27	83	13	69	44	0	0	55	0.99
101713--101780	29	2.4	28	80	9	75	30	19	14	35	1.92
102823--102897	32	2.4	31	80	12	82	26	13	9	50	1.71
104532--104579	12	4.2	11	79	15	53	35	0	12	52	1.40
109214--109246	6	5.5	6	96	0	57	18	48	15	18	1.81
110317--110367	24	2.1	24	85	0	66	9	5	23	60	1.50
115246--115285	18	2.2	18	100	0	80	32	20	20	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
119117--119174	30	1.9	30	82	6	73	41	1	8	48	1.44
122765--122848	42	2.0	42	86	9	118	47	20	0	32	1.50
128743--129213	235	2.0	235	99	0	924	40	11	12	36	1.78
134416--134445	2	15.0	2	100	0	60	0	50	0	50	1.00
141715--141750	17	2.1	17	89	0	54	30	47	5	16	1.70
145054--145117	29	2.3	28	78	13	69	48	6	3	42	1.44
162621--162758	67	2.1	67	97	0	258	22	32	5	39	1.78
164448--164480	17	2.0	17	88	5	50	6	27	0	66	1.15
165678--165714	19	1.9	19	88	0	56	40	2	0	56	1.13
167594--167672	38	2.1	37	97	2	149	40	2	16	40	1.62
171129--171162	6	5.7	6	100	0	68	35	0	50	14	1.44
172613--172664	26	2.0	26	84	0	68	51	11	3	32	1.56
172630--172664	13	2.7	13	83	16	54	54	14	2	28	1.54
182053--182089	18	2.0	19	89	5	58	21	8	2	67	1.29
182896--183089	29	6.6	28	71	14	88	42	2	23	31	1.68
182853--183194	30	11.6	30	66	15	112	41	3	23	31	1.70
182849--183147	59	5.1	57	76	9	223	40	3	25	31	1.71
183145--183222	30	2.6	30	80	10	86	47	6	15	30	1.70
184323--184348	3	8.7	3	100	0	52	34	0	0	65	0.93
185022--185100	6	13.5	6	76	10	74	56	3	0	39	1.17
185014--185115	17	5.9	17	82	6	125	54	3	0	41	1.19
185020--185115	35	2.8	34	84	10	124	56	4	0	39	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
187030--187088	16	3.8	16	72	17	52	54	20	8	16	1.68
187027--187099	32	2.3	32	81	6	96	49	21	10	17	1.78
187027--187089	31	2.0	31	87	3	90	50	22	9	17	1.74
190695--190723	3	9.7	3	100	0	58	31	0	34	34	1.58

Tables:   1

The End!