Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007869.1 Kokia drynarioides strain JFW-HI SEQ_122510, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 806

Length: 1344
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32


Found at i:636 original size:27 final size:26

Alignment explanation


    Indices: 589--640  Score: 77
    Period size: 27  Copynumber: 2.0  Consensus size: 26

        579 AAATATCGAG

                      *  *            
        589 TGGTGCCTATCGATAGGCGGCACCAA
          1 TGGTGCCTATAGAGAGGCGGCACCAA

                                      
        615 TGGTGCCATATAGAGAGGCGGCACCA
          1 TGGTGCC-TATAGAGAGGCGGCACCA

        641 GTGCTTATTT


Statistics
Matches: 23,  Mismatches: 2, Indels: 1
        0.88            0.08        0.04

Matches are distributed among these distances:
  26    7  0.30
  27   16  0.70

ACGTcount: A:0.25, C:0.25, G:0.33, T:0.17


Consensus pattern (26 bp):   
TGGTGCCTATAGAGAGGCGGCACCAA
Done.