Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007874.1 Kokia drynarioides strain JFW-HI SEQ_122515, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9531
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.31


Found at i:2513 original size:22 final size:22

Alignment explanation


    Indices: 2488--2530  Score: 86
    Period size: 22  Copynumber: 2.0  Consensus size: 22

       2478 AAATGAGAAG

                                  
       2488 AATTGAATAGAACTCAAAGCAT
          1 AATTGAATAGAACTCAAAGCAT

                                 
       2510 AATTGAATAGAACTCAAAGCA
          1 AATTGAATAGAACTCAAAGCA

       2531 AATATGATAT


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   21  1.00

ACGTcount: A:0.51, C:0.14, G:0.14, T:0.21


Consensus pattern (22 bp):   
AATTGAATAGAACTCAAAGCAT

Found at i:8236 original size:12 final size:12

Alignment explanation


    Indices: 8219--8262  Score: 54
    Period size: 12  Copynumber: 3.7  Consensus size: 12

       8209 GGAGGGGAAG

                        
       8219 GAAGAAGAGAAA
          1 GAAGAAGAGAAA

                        
       8231 GAAGAAGA-AAA
          1 GAAGAAGAGAAA

                 *       
       8242 GAAAGGAGAGAAA
          1 G-AAGAAGAGAAA

              *     
       8255 GAGGAAGA
          1 GAAGAAGA

       8263 TTTTGTTGCA


Statistics
Matches: 27,  Mismatches: 3, Indels: 4
        0.79            0.09        0.12

Matches are distributed among these distances:
  11    4  0.15
  12   19  0.70
  13    4  0.15

ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00


Consensus pattern (12 bp):   
GAAGAAGAGAAA
Done.