Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01007877.1 Kokia drynarioides strain JFW-HI SEQ_122518, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 7316
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.27
Found at i:4650 original size:229 final size:229
Alignment explanation
Indices: 4249--4705 Score: 905
Period size: 229 Copynumber: 2.0 Consensus size: 229
4239 TTCCCAGAGA
4249 ATGACATGAAGGAAAAACTCTCATAAAATGATAGAAGGGAGAGTAAAACAAGTGACAGATTTCAA
1 ATGACATGAAGGAAAAACTCTCATAAAATGATAGAAGGGAGAGTAAAACAAGTGACAGATTTCAA
4314 TCTCCATGGAAGTTACAGTGGAATGGAGTGAAGCTTTGAAGAGGGATAGGTTGCAGCCGCAACGG
66 TCTCCATGGAAGTTACAGTGGAATGGAGTGAAGCTTTGAAGAGGGATAGGTTGCAGCCGCAACGG
*
4379 CAGACTTAACATCCTAAAATCAAAGAGAGAAAGGTTGAAGTCGCAACGACGAACCTAACACCTTT
131 CAGACTTAACATCCTAAAATCAAAGAGAGAAAGGTTGAAGTCGCAACGACGAACCTAACACCTTA
4444 AAACTGAATAGGGATAGATTAAAACCGTAATGAT
196 AAACTGAATAGGGATAGATTAAAACCGTAATGAT
4478 ATGACATGAAGGAAAAACTCTCATAAAATGATAGAAGGGAGAGTAAAACAAGTGACAGATTTCAA
1 ATGACATGAAGGAAAAACTCTCATAAAATGATAGAAGGGAGAGTAAAACAAGTGACAGATTTCAA
4543 TCTCCATGGAAGTTACAGTGGAATGGAGTGAAGCTTTGAAGAGGGATAGGTTGCAGCCGCAACGG
66 TCTCCATGGAAGTTACAGTGGAATGGAGTGAAGCTTTGAAGAGGGATAGGTTGCAGCCGCAACGG
4608 CAGACTTAACATCCTAAAATCAAAGAGAGAAAGGTTGAAGTCGCAACGACGAACCTAACACCTTA
131 CAGACTTAACATCCTAAAATCAAAGAGAGAAAGGTTGAAGTCGCAACGACGAACCTAACACCTTA
4673 AAACTGAATAGGGATAGATTAAAACCGTAATGA
196 AAACTGAATAGGGATAGATTAAAACCGTAATGA
4706 CGGATCTAAC
Statistics
Matches: 227, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
229 227 1.00
ACGTcount: A:0.41, C:0.15, G:0.24, T:0.20
Consensus pattern (229 bp):
ATGACATGAAGGAAAAACTCTCATAAAATGATAGAAGGGAGAGTAAAACAAGTGACAGATTTCAA
TCTCCATGGAAGTTACAGTGGAATGGAGTGAAGCTTTGAAGAGGGATAGGTTGCAGCCGCAACGG
CAGACTTAACATCCTAAAATCAAAGAGAGAAAGGTTGAAGTCGCAACGACGAACCTAACACCTTA
AAACTGAATAGGGATAGATTAAAACCGTAATGAT
Found at i:4872 original size:49 final size:49
Alignment explanation
Indices: 4614--5867 Score: 471
Period size: 49 Copynumber: 25.6 Consensus size: 49
4604 ACGGCAGACT
* * * * * * * *
4614 TAACATCC-TAAAATCAAAGAGAGAAAGGTTGAAGTCGCAACGACGAACC
1 TAACA-CCTTAAAATCGAAGAGGGAAAGATTGAAGTCGTAATGATGGATC
* * * ** *
4663 TAACACCTTAAAA-CTGAATAGGGATAGATTAAAACCGTAATGACGGATC
1 TAACACCTTAAAATC-GAAGAGGGAAAGATTGAAGTCGTAATGATGGATC
* * *
4712 TAACA-CTCTAAAATCGAAGAGGAAAAGTTTGAAG-CTGTAA-CA-GCGAATC
1 TAACACCT-TAAAATCGAAGAGGGAAAGATTGAAGTC-GTAATGATG-G-ATC
** * * * * * *** *
4761 TTGCACCTTAAAA-CTGAAAAGGGATAGGTTGAAG-CTGCAACGGCAGACC
1 TAACACCTTAAAATC-GAAGAGGGAAAGATTGAAGTC-GTAATGATGGATC
** * * *
4810 TAACACCCAAAAATCGAAAAGGGAAAGATTTAAGTCGTAATGACGGATC
1 TAACACCTTAAAATCGAAGAGGGAAAGATTGAAGTCGTAATGATGGATC
* * * ** * *
4859 TTACACTTTAAAATCGAAGAGGG-AAGGTTGAAGTCACAATGATAGACC
1 TAACACCTTAAAATCGAAGAGGGAAAGATTGAAGTCGTAATGATGGATC
* * * * *
4907 TAACACCCTAAAATCGAAGAGGGATAGATTGAAATTGTAATGGTGGATC
1 TAACACCTTAAAATCGAAGAGGGAAAGATTGAAGTCGTAATGATGGATC
* * * * *
4956 TAACACCTTAAAATTGAAGAGAGAAAGATTGAAGCCGTAACGGTGGATC
1 TAACACCTTAAAATCGAAGAGGGAAAGATTGAAGTCGTAATGATGGATC
* * * * * ** *
5005 TTACACCTTAAAATTGAAGAGGGATAGGTTGAAG-CTGTAACGGCGGACC
1 TAACACCTTAAAATCGAAGAGGGAAAGATTGAAGTC-GTAATGATGGATC
* * * ** * *
5054 TAACA--TAAAAAACCAAAGAGGGAAAGATTGAAGTCACAATAATGGATT
1 TAACACCT-TAAAATCGAAGAGGGAAAGATTGAAGTCGTAATGATGGATC
* * * * * * *
5102 TTACACCTTAAAATCGAAGAGGGATAGATTCAGGTCGTAATGGTGAACC
1 TAACACCTTAAAATCGAAGAGGGAAAGATTGAAGTCGTAATGATGGATC
* * * * * * *
5151 TAACATCTTAAAATAGAAAAGGGATAGGTTGAAGTCGTAA-GACGGACC
1 TAACACCTTAAAATCGAAGAGGGAAAGATTGAAGTCGTAATGATGGATC
* * * * * * * *
5199 TAACACCTTAAAACCAAATAGGGATAGATTTAAGCCGTAACGGTGGATC
1 TAACACCTTAAAATCGAAGAGGGAAAGATTGAAGTCGTAATGATGGATC
** * * *
5248 TAACACCCAAAAAATCGAAGAGGAAAAGATTGAAGCCGTAACGATGGATC
1 TAACA-CCTTAAAATCGAAGAGGGAAAGATTGAAGTCGTAATGATGGATC
* * * * * * * *
5298 TTACACCTTAGAA-CTGAAGAGGGATAGGTTGAAG-CTGTAACGGTAGACC
1 TAACACCTTAAAATC-GAAGAGGGAAAGATTGAAGTC-GTAATGATGGATC
** * * ** * *
5347 TAACACCCAAAAATCGAATAGGAAAAGATTGAAGTCACAACGATAGATC
1 TAACACCTTAAAATCGAAGAGGGAAAGATTGAAGTCGTAATGATGGATC
* * * * * * ** *
5396 TTACACCTTAAAATCGAATAGGGATACATTGAAGCCGTAACGGCGGACC
1 TAACACCTTAAAATCGAAGAGGGAAAGATTGAAGTCGTAATGATGGATC
** * * * ** * **
5445 TAACACCCAAAAACCAAAGAGGGAAAGATTAAAGTCACAACGACAGATC
1 TAACACCTTAAAATCGAAGAGGGAAAGATTGAAGTCGTAATGATGGATC
* * * * * * * * *** *
5494 TTAGACCTTAATATCGAAAAGGGATAGGTTCAAGTCGCAATGGCAGACC
1 TAACACCTTAAAATCGAAGAGGGAAAGATTGAAGTCGTAATGATGGATC
* * * * * * *
5543 TAACATCTTAAAGCAT--AAGAGGGATAGGTTGAAGTTGCAATGACGGACC
1 TAACACCTTAAA--ATCGAAGAGGGAAAGATTGAAGTCGTAATGATGGATC
* * * * * * * *
5592 TAAC-TCTCTAAAATTGAAGAGGGATAGATTTAAGCCGCAACGTTGGATC
1 TAACACCT-TAAAATCGAAGAGGGAAAGATTGAAGTCGTAATGATGGATC
** * * * * * * *
5641 TAACACCCAAAAAAATCAAAGA-GGAAAAATTGAAGCCGCAACGGTGAATC
1 TAACA-CC-TTAAAATCGAAGAGGGAAAGATTGAAGTCGTAATGATGGATC
* * * * * ** *
5691 TTACACCTTAAAA-CTGAAGAGGGATAGGTTGAAGTCGCAACGGCGGACC
1 TAACACCTTAAAATC-GAAGAGGGAAAGATTGAAGTCGTAATGATGGATC
** * ** **
5740 TAACACCAAAAAATCGAAGAGGGAAATATTGAAGTCACAACAATGGATC
1 TAACACCTTAAAATCGAAGAGGGAAAGATTGAAGTCGTAATGATGGATC
* * * * * * * *
5789 TTACACCTTAAAATCAAAGAGGGATAGGTTGAAGTTGGAATGGCT-GACC
1 TAACACCTTAAAATCGAAGAGGGAAAGATTGAAGTCGTAAT-GATGGATC
* * * *
5838 TAATACCATAAAACCGAAGAGGGATAGATT
1 TAACACCTTAAAATCGAAGAGGGAAAGATT
5868 AAAGCCACGA
Statistics
Matches: 895, Mismatches: 273, Indels: 74
0.72 0.22 0.06
Matches are distributed among these distances:
47 5 0.01
48 127 0.14
49 674 0.75
50 77 0.09
51 12 0.01
ACGTcount: A:0.41, C:0.17, G:0.23, T:0.20
Consensus pattern (49 bp):
TAACACCTTAAAATCGAAGAGGGAAAGATTGAAGTCGTAATGATGGATC
Found at i:4919 original size:48 final size:48
Alignment explanation
Indices: 4804--4939 Score: 146
Period size: 48 Copynumber: 2.8 Consensus size: 48
4794 GCTGCAACGG
* * * **
4804 CAGACCTAACACCCAAAAATCGAAAAGGGAAAGATTTAAGTCGTAATGA
1 CAGACCTAACACCCTAAAATCGAAGAGGG-AAGATTGAAGTCACAATGA
* * * ** *
4853 CGGATCTTACACTTTAAAATCGAAGAGGGAAGGTTGAAGTCACAATGA
1 CAGACCTAACACCCTAAAATCGAAGAGGGAAGATTGAAGTCACAATGA
*
4901 TAGACCTAACACCCTAAAATCGAAGAGGGATAGATTGAA
1 CAGACCTAACACCCTAAAATCGAAGAGGGA-AGATTGAA
4940 ATTGTAATGG
Statistics
Matches: 68, Mismatches: 18, Indels: 2
0.77 0.20 0.02
Matches are distributed among these distances:
48 39 0.57
49 29 0.43
ACGTcount: A:0.43, C:0.17, G:0.21, T:0.19
Consensus pattern (48 bp):
CAGACCTAACACCCTAAAATCGAAGAGGGAAGATTGAAGTCACAATGA
Found at i:4982 original size:146 final size:147
Alignment explanation
Indices: 4580--5437 Score: 534
Period size: 146 Copynumber: 5.9 Consensus size: 147
4570 GTGAAGCTTT
* * * * * * * * * *
4580 GAAGAGGGATAGGTTGCAGCCGCAACGGCAGACTTAACATCCTAAAATCAAAGAGAGAAAGGTTG
1 GAAGAGGGATAGGTTGAAGCTGTAACGACAGACCTAACACCCAAAAACCAAAGAGGGAAAGATTG
* * ** * * * * * * * * *
4645 AAGTCGCAACGACGAACCTAACACCTTAAAA-CTGAATAGGGATAGATTAAAACCGTAATGACGG
66 AAGTCGTAATGGTGGATCTAACACCTAAAAATC-GAAGAGGGAAAGATTGAAGCCGTAACGATGG
*
4709 ATCTAACA-CTCTAAAATC
130 ATCTTACACCT-TAAAATC
* * * * ** ** * * *
4727 GAAGAGGAAAAGTTTGAAGCTGTAAC-AGC-GAATCTTGCACCTTAAAACTGAAA-AGGGATAGG
1 GAAGAGGGATAGGTTGAAGCTGTAACGA-CAG-ACCTAACACCCAAAAAC-CAAAGAGGGAAAGA
* * ** * * * * * *
4789 TTGAAG-CTGCAACGGCAGACCTAACACCCAAAAATCGAAAAGGGAAAGATTTAAGTCGTAATGA
63 TTGAAGTC-GTAATGGTGGATCTAACACCTAAAAATCGAAGAGGGAAAGATTGAAGCCGTAACGA
* *
4853 CGGATCTTACACTTTAAAATC
127 TGGATCTTACACCTTAAAATC
** * * * * * *
4874 GAAGAGGGA-AGGTTGAAG-TCACAATGATAGACCTAACACCCTAAAATCGAAGAGGGATAGATT
1 GAAGAGGGATAGGTTGAAGCT-GTAACGACAGACCTAACACCCAAAAACCAAAGAGGGAAAGATT
* * * * * *
4937 GAAATTGTAATGGTGGATCTAACACCTTAAAATTGAAGAGAGAAAGATTGAAGCCGTAACGGTGG
65 GAAGTCGTAATGGTGGATCTAACACCTAAAAATCGAAGAGGGAAAGATTGAAGCCGTAACGATGG
*
5002 ATCTTACACCTTAAAATT
130 ATCTTACACCTTAAAATC
* * **
5020 GAAGAGGGATAGGTTGAAGCTGTAACGGCGGACCTAACA-TAAAAAACCAAAGAGGGAAAGATTG
1 GAAGAGGGATAGGTTGAAGCTGTAACGACAGACCTAACACCCAAAAACCAAAGAGGGAAAGATTG
** ** * * * * * * * * * *
5084 AAGTCACAATAATGGATTTTACACCTTAAAATCGAAGAGGGATAGATTCAGGTCGTAATGGTGAA
66 AAGTCGTAATGGTGGATCTAACACCTAAAAATCGAAGAGGGAAAGATTGAAGCCGTAACGATGGA
* * * *
5149 CCTAACATCTTAAAATA
131 TCTTACACCTTAAAATC
* * ** * *
5166 GAAAAGGGATAGGTTGAAG-TCGTAA-GACGGACCTAACACCTTAAAACCAAATAGGGATAGATT
1 GAAGAGGGATAGGTTGAAGCT-GTAACGACAGACCTAACACCCAAAAACCAAAGAGGGAAAGATT
* * * * *
5229 TAAGCCGTAACGGTGGATCTAACACCCAAAAAATCGAAGAGGAAAAGATTGAAGCCGTAACGATG
65 GAAGTCGTAATGGTGGATCTAACA-CCTAAAAATCGAAGAGGGAAAGATTGAAGCCGTAACGATG
*
5294 GATCTTACACCTTAGAA-C
129 GATCTTACACCTTAAAATC
** * * * *
5312 TGAAGAGGGATAGGTTGAAGCTGTAACGGTAGACCTAACACCCAAAAATCGAATAGGAAAAGATT
1 -GAAGAGGGATAGGTTGAAGCTGTAACGACAGACCTAACACCCAAAAACCAAAGAGGGAAAGATT
** * * * * * * * *
5377 GAAGTCACAACGATAGATCTTACACCTTAAAATCGAATAGGGATACATTGAAGCCGTAACG
65 GAAGTCGTAATGGTGGATCTAACACCTAAAAATCGAAGAGGGAAAGATTGAAGCCGTAACG
5438 GCGGACCTAA
Statistics
Matches: 544, Mismatches: 148, Indels: 38
0.75 0.20 0.05
Matches are distributed among these distances:
145 16 0.03
146 243 0.45
147 232 0.43
148 53 0.10
ACGTcount: A:0.40, C:0.16, G:0.23, T:0.20
Consensus pattern (147 bp):
GAAGAGGGATAGGTTGAAGCTGTAACGACAGACCTAACACCCAAAAACCAAAGAGGGAAAGATTG
AAGTCGTAATGGTGGATCTAACACCTAAAAATCGAAGAGGGAAAGATTGAAGCCGTAACGATGGA
TCTTACACCTTAAAATC
Found at i:5709 original size:393 final size:390
Alignment explanation
Indices: 4909--5871 Score: 1189
Period size: 393 Copynumber: 2.5 Consensus size: 390
4899 GATAGACCTA
* * * * * ** *
4909 ACACCCTAAAA-TCGAAGAGGGATAGATTGAAATTGTAATGGTGGATCTAACACCTTAAAATTGA
1 ACACCTTAAAACT-GAAGAGGGATAGGTTG-AAGTGTAACGGTGGACCTAACACCAAAAAATCGA
* ** * *
4973 AGA-GAGAAAGATTGAAGCCGTAACGGTGGATCTTACACCTTAAAATTGAAGAGGGATAGGTTGA
64 AGAGGA-AAAGATTGAAGTCACAACGATGGATCTTACACCTTAAAATCGAAGAGGGATAGGTTGA
** * * ** *
5037 AGCTGTAACGGCGGACCTAACATAAAAAACCAAAGAGGGAAAGATTGAAGTCACAATAATGGATT
128 AGCTGTAACGGCGGACCTAACACCAAAAACCAAAGAGGGAAAGATTAAAGTCACAACAACAGATC
* * * * *
5102 TTACACCTTAAAATCGAAGAGGGATAGATTCAGGTCGTAATGGTGAACCTAACATCTTAAAATAG
193 TTACACCTTAAAATCGAAAAGGGATAGATTCAAGTCGCAATGGAGAACCTAACATCTTAAAACAG
* *
5167 AAAAGGGATAGGTTGAAGTCGTAAGACGGACCTAACACCTTAAAACCAAATAGGGATAGATTTAA
258 AAAAGGGATAGGTTGAAGTCGCAAGACGGACCTAACACCTTAAAACCAAAGAGGGATAGATTTAA
* * * *
5232 GCCGTAACGGTGGATCTAACACCCAAAAAATCGAAGAGGAAAAGATTGAAGCCGTAACGATGGAT
323 GCCGCAACGGTGGATCTAACACCCAAAAAATCAAAGAGGAAAAGATTGAAGCCGCAACGATGAAT
5297 CTT
388 CTT
* * *
5300 ACACCTTAGAACTGAAGAGGGATAGGTTGAAGCTGTAACGGTAGACCTAACACCCAAAAATCGAA
1 ACACCTTAAAACTGAAGAGGGATAGGTTGAAG-TGTAACGGTGGACCTAACACCAAAAAATCGAA
* * * **
5365 TAGGAAAAGATTGAAGTCACAACGATAGATCTTACACCTTAAAATCGAATAGGGATACATTGAAG
65 GAGGAAAAGATTGAAGTCACAACGATGGATCTTACACCTTAAAATCGAAGAGGGATAGGTTGAAG
* *
5430 CCGTAACGGCGGACCTAACACCCAAAAACCAAAGAGGGAAAGATTAAAGTCACAACGACAGATCT
130 CTGTAACGGCGGACCTAACA-CCAAAAACCAAAGAGGGAAAGATTAAAGTCACAACAACAGATCT
* * * * *
5495 TAGACCTTAATATCGAAAAGGGATAGGTTCAAGTCGCAATGGCAG-ACCTAACATCTTAAAGCAT
194 TACACCTTAAAATCGAAAAGGGATAGATTCAAGTCGCAATGG-AGAACCTAACATCTTAAAACAG
* * * ***
5559 AAGAGGGATAGGTTGAAGTTGCAATGACGGACCTAAC-TCTCTAAAATTGAAGAGGGATAGATTT
258 AAAAGGGATAGGTTGAAGTCGCAA-GACGGACCTAACACCT-TAAAACCAAAGAGGGATAGATTT
* *
5623 AAGCCGCAACGTTGGATCTAACACCCAAAAAAATCAAAGAGGAAAA-ATTGAAGCCGCAACGGTG
321 AAGCCGCAACGGTGGATCTAACACCC-AAAAAATCAAAGAGGAAAAGATTGAAGCCGCAACGATG
5687 AATCTT
385 AATCTT
* *
5693 ACACCTTAAAACTGAAGAGGGATAGGTTGAAGTCGCAACGGCGGACCTAACACCAAAAAATCGAA
1 ACACCTTAAAACTGAAGAGGGATAGGTTGAAGT-GTAACGGTGGACCTAACACCAAAAAATCGAA
* * * *
5758 GAGGGAAATATTGAAGTCACAACAATGGATCTTACACCTTAAAATCAAAGAGGGATAGGTTGAAG
65 GAGGAAAAGATTGAAGTCACAACGATGGATCTTACACCTTAAAATCGAAGAGGGATAGGTTGAAG
* * * * * * *
5823 TTGGAATGGCTGACCTAATACCATAAAACCGAAGAGGGATAGATTAAAG
130 CTGTAACGGCGGACCTAACACCA-AAAACCAAAGAGGGAAAGATTAAAG
5872 CCACGACGGT
Statistics
Matches: 487, Mismatches: 75, Indels: 18
0.84 0.13 0.03
Matches are distributed among these distances:
390 2 0.00
391 121 0.25
392 118 0.24
393 228 0.47
394 18 0.04
ACGTcount: A:0.41, C:0.17, G:0.23, T:0.20
Consensus pattern (390 bp):
ACACCTTAAAACTGAAGAGGGATAGGTTGAAGTGTAACGGTGGACCTAACACCAAAAAATCGAAG
AGGAAAAGATTGAAGTCACAACGATGGATCTTACACCTTAAAATCGAAGAGGGATAGGTTGAAGC
TGTAACGGCGGACCTAACACCAAAAACCAAAGAGGGAAAGATTAAAGTCACAACAACAGATCTTA
CACCTTAAAATCGAAAAGGGATAGATTCAAGTCGCAATGGAGAACCTAACATCTTAAAACAGAAA
AGGGATAGGTTGAAGTCGCAAGACGGACCTAACACCTTAAAACCAAAGAGGGATAGATTTAAGCC
GCAACGGTGGATCTAACACCCAAAAAATCAAAGAGGAAAAGATTGAAGCCGCAACGATGAATCTT
Found at i:5823 original size:98 final size:98
Alignment explanation
Indices: 4819--5931 Score: 776
Period size: 98 Copynumber: 11.4 Consensus size: 98
4809 CTAACACCCA
* * * * * * * ***
4819 AAAATCGAAAAGGGAAAGATTTAAGTCGTAATGACGGATCTTACACTTTAAAATCGAAGAGGG-A
1 AAAATCGAAGAGGGATAGATTGAAGTCGTAACGGCGGACCTAACACCAAAAAATCGAAGAGGGAA
* * * * * *
4883 AGGTTGAAGTCACAATGATAGACCTAACACCCT
66 AGATTGAAGTCACAACGATGGATCTTACACCTT
* * * * * ** * *
4916 AAAATCGAAGAGGGATAGATTGAAATTGTAATGGTGGATCTAACACCTTAAAATTGAAGAGAGAA
1 AAAATCGAAGAGGGATAGATTGAAGTCGTAACGGCGGACCTAACACCAAAAAATCGAAGAGGGAA
* ** *
4981 AGATTGAAGCCGTAACGGTGGATCTTACACCTT
66 AGATTGAAGTCACAACGATGGATCTTACACCTT
* * * * *
5014 AAAATTGAAGAGGGATAGGTTGAAG-CTGTAACGGCGGACCTAACA-TAAAAAACCAAAGAGGGA
1 AAAATCGAAGAGGGATAGATTGAAGTC-GTAACGGCGGACCTAACACCAAAAAATCGAAGAGGGA
** *
5077 AAGATTGAAGTCACAATAATGGATTTTACACCTT
65 AAGATTGAAGTCACAACGATGGATCTTACACCTT
* * * * * * ** * * *
5111 AAAATCGAAGAGGGATAGATTCAGGTCGTAATGGTGAACCTAACATCTTAAAATAGAAAAGGGAT
1 AAAATCGAAGAGGGATAGATTGAAGTCGTAACGGCGGACCTAACACCAAAAAATCGAAGAGGGAA
* ** * * *
5176 AGGTTGAAGTCGTAA-GACGGACCTAACACCTT
66 AGATTGAAGTCACAACGATGGATCTTACACCTT
* * * * * * * *
5208 AAAACCAAATAGGGATAGATTTAAGCCGTAACGGTGGATCTAACACCCAAAAAATCGAAGAGGAA
1 AAAATCGAAGAGGGATAGATTGAAGTCGTAACGGCGGACCTAACA-CCAAAAAATCGAAGAGGGA
* **
5273 AAGATTGAAGCCGTAACGATGGATCTTACACCTT
65 AAGATTGAAGTCACAACGATGGATCTTACACCTT
* * ** * * *
5307 AGAA-CTGAAGAGGGATAGGTTGAAG-CTGTAACGGTAGACCTAACACCCAAAAATCGAATAGGA
1 AAAATC-GAAGAGGGATAGATTGAAGTC-GTAACGGCGGACCTAACACCAAAAAATCGAAGAGGG
*
5370 AAAGATTGAAGTCACAACGATAGATCTTACACCTT
64 AAAGATTGAAGTCACAACGATGGATCTTACACCTT
* * * * * *
5405 AAAATCGAATAGGGATACATTGAAGCCGTAACGGCGGACCTAACACCCAAAAACCAAAGAGGGAA
1 AAAATCGAAGAGGGATAGATTGAAGTCGTAACGGCGGACCTAACACCAAAAAATCGAAGAGGGAA
* ** *
5470 AGATTAAAGTCACAACGACAGATCTTAGACCTT
66 AGATTGAAGTCACAACGATGGATCTTACACCTT
* * * * * * * * **
5503 AATATCGAAAAGGGATAGGTTCAAGTCGCAATGGCAGACCTAACATCTTAAAGCAT--AAGAGGG
1 AAAATCGAAGAGGGATAGATTGAAGTCGTAACGGCGGACCTAACA-C-CAAAAAATCGAAGAGGG
* * ** * * *
5566 ATAGGTTGAAGTTGCAATGACGGA-CCTA-ACTCTCT
64 AAAGATTGAAGTCACAACGATGGATCTTACAC-CT-T
* * * * ** * *
5601 AAAATTGAAGAGGGATAGATTTAAGCCGCAACGTTGGATCTAACACCCAAAAAAATCAAAGA-GG
1 AAAATCGAAGAGGGATAGATTGAAGTCGTAACGGCGGACCTAACA-CC-AAAAAATCGAAGAGGG
* * * * *
5665 AAAAATTGAAGCCGCAACGGTGAATCTTACACCTT
64 AAAGATTGAAGTCACAACGATGGATCTTACACCTT
* *
5700 AAAA-CTGAAGAGGGATAGGTTGAAGTCGCAACGGCGGACCTAACACCAAAAAATCGAAGAGGGA
1 AAAATC-GAAGAGGGATAGATTGAAGTCGTAACGGCGGACCTAACACCAAAAAATCGAAGAGGGA
* *
5764 AATATTGAAGTCACAACAATGGATCTTACACCTT
65 AAGATTGAAGTCACAACGATGGATCTTACACCTT
* * * * * * * * * *
5798 AAAATCAAAGAGGGATAGGTTGAAGTTGGAATGGCTGACCTAATACCATAAAACCGAAGAGGGAT
1 AAAATCGAAGAGGGATAGATTGAAGTCGTAACGGCGGACCTAACACCAAAAAATCGAAGAGGGAA
* * * * * *
5863 AGATTAAAGCCACGACGGTGGATC-TAAACATT
66 AGATTGAAGTCACAACGATGGATCTTACACCTT
* * * * * *
5895 AAAACCAAAGAAGGAACAGATTGAATTCGTAATGGCG
1 AAAATCGAAG-AGGGATAGATTGAAGTCGTAACGGCG
5932 AATCTTACAC
Statistics
Matches: 795, Mismatches: 198, Indels: 45
0.77 0.19 0.04
Matches are distributed among these distances:
96 2 0.00
97 206 0.26
98 466 0.59
99 107 0.13
100 12 0.02
101 2 0.00
ACGTcount: A:0.41, C:0.16, G:0.23, T:0.20
Consensus pattern (98 bp):
AAAATCGAAGAGGGATAGATTGAAGTCGTAACGGCGGACCTAACACCAAAAAATCGAAGAGGGAA
AGATTGAAGTCACAACGATGGATCTTACACCTT
Done.