Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007882.1 Kokia drynarioides strain JFW-HI SEQ_122523, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 878

Length: 1464
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.38


Found at i:147 original size:17 final size:18

Alignment explanation


    Indices: 125--158  Score: 52
    Period size: 18  Copynumber: 1.9  Consensus size: 18

        115 ATTAATCTAC

                              
        125 AAATT-ATATCATTTTTT
          1 AAATTAATATCATTTTTT

                    *        
        142 AAATTAATTTCATTTTT
          1 AAATTAATATCATTTTT

        159 GTATTATTTT


Statistics
Matches: 15,  Mismatches: 1, Indels: 1
        0.88            0.06        0.06

Matches are distributed among these distances:
  17    5  0.33
  18   10  0.67

ACGTcount: A:0.35, C:0.06, G:0.00, T:0.59


Consensus pattern (18 bp):   
AAATTAATATCATTTTTT

Found at i:240 original size:18 final size:18

Alignment explanation


    Indices: 212--256  Score: 54
    Period size: 18  Copynumber: 2.4  Consensus size: 18

        202 TTTTTGTAAG

                           *   
        212 TTTTTATAATTTAATGCAA
          1 TTTTTA-AATTTAATACAA

                        *     
        231 TTTTTAAATTTATTACAA
          1 TTTTTAAATTTAATACAA

                    
        249 TTTATTAA
          1 TTT-TTAA

        257 TTTTCATTAA


Statistics
Matches: 23,  Mismatches: 2, Indels: 2
        0.85            0.07        0.07

Matches are distributed among these distances:
  18   13  0.57
  19   10  0.43

ACGTcount: A:0.38, C:0.04, G:0.02, T:0.56


Consensus pattern (18 bp):   
TTTTTAAATTTAATACAA

Done.