Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007883.1 Kokia drynarioides strain JFW-HI SEQ_122524, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2217
ACGTcount: A:0.35, C:0.16, G:0.13, T:0.36


Found at i:563 original size:18 final size:18

Alignment explanation


    Indices: 542--587  Score: 51
    Period size: 18  Copynumber: 2.6  Consensus size: 18

        532 AAATTAATGA

                          *   
        542 AAATTAATAAATTGTAAT
          1 AAATTAATAAATTGCAAT

                             * 
        560 AAATTTAA-AAATTGCATT
          1 AAA-TTAATAAATTGCAAT

                       
        578 AAATT-ATAAA
          1 AAATTAATAAA

        588 AACTTACAAA


Statistics
Matches: 24,  Mismatches: 2, Indels: 5
        0.77            0.06        0.16

Matches are distributed among these distances:
  16    1  0.04
  17    5  0.21
  18   14  0.58
  19    4  0.17

ACGTcount: A:0.57, C:0.02, G:0.04, T:0.37


Consensus pattern (18 bp):   
AAATTAATAAATTGCAAT
Done.