Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007886.1 Kokia drynarioides strain JFW-HI SEQ_122527, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9966
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34


Found at i:2280 original size:31 final size:31

Alignment explanation


    Indices: 2242--2345  Score: 115
    Period size: 31  Copynumber: 3.4  Consensus size: 31

       2232 TTTAATAAAT

                                           
       2242 TTAATTTAATATTTATCTTGATAGTATTTTA
          1 TTAATTTAATATTTATCTTGATAGTATTTTA

                         *   *   *       * 
       2273 TTAATTTAATATTAAT-ATGAGA-TA-TTAA
          1 TTAATTTAATATTTATCTTGATAGTATTTTA

                    *          *            
       2301 TTCAATTTGATATTTATCTAGATAGTATTTTA
          1 TT-AATTTAATATTTATCTTGATAGTATTTTA

               *         
       2333 TTAGTTTAATATT
          1 TTAATTTAATATT

       2346 AATGTGATTA


Statistics
Matches: 57,  Mismatches: 12, Indels: 8
        0.74            0.16        0.10

Matches are distributed among these distances:
  28    5  0.09
  29   14  0.25
  30    7  0.12
  31   26  0.46
  32    5  0.09

ACGTcount: A:0.36, C:0.03, G:0.08, T:0.54


Consensus pattern (31 bp):   
TTAATTTAATATTTATCTTGATAGTATTTTA
Done.