Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007887.1 Kokia drynarioides strain JFW-HI SEQ_122528, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8784
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32


Found at i:6314 original size:31 final size:30

Alignment explanation


    Indices: 6216--6319  Score: 113
    Period size: 31  Copynumber: 3.4  Consensus size: 30

       6206 TAATCACATT

                     *                     
       6216 AATATTAAACTAATAAAATACTATCTAGATA
          1 AATATTAAATTAATAAAATACTATC-AGATA

                 *          *      *   *  *
       6247 AATATCAAATTGAAT-TAATA-TCTCATATT
          1 AATATTAAATT-AATAAAATACTATCAGATA

                                           
       6276 AATATTAAATTAATAAAATACTATCAAGATA
          1 AATATTAAATTAATAAAATACTATC-AGATA

                         
       6307 AATATTAAATTAA
          1 AATATTAAATTAA

       6320 ATTTATTAAA


Statistics
Matches: 58,  Mismatches: 11, Indels: 8
        0.75            0.14        0.10

Matches are distributed among these distances:
  28    3  0.05
  29   17  0.29
  30    6  0.10
  31   29  0.50
  32    3  0.05

ACGTcount: A:0.54, C:0.08, G:0.03, T:0.36


Consensus pattern (30 bp):   
AATATTAAATTAATAAAATACTATCAGATA
Done.