Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007890.1 Kokia drynarioides strain JFW-HI SEQ_122531, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5226
ACGTcount: A:0.37, C:0.16, G:0.14, T:0.32


Found at i:2394 original size:69 final size:69

Alignment explanation


    Indices: 2283--2422  Score: 280
    Period size: 69  Copynumber: 2.0  Consensus size: 69

       2273 GATATTGAGC

                                                                             
       2283 AGATATTCAAAGAAGCAAATGACACTATTATCCTAAATGGCAGGAGAAATAGAACTTCAGAATCA
          1 AGATATTCAAAGAAGCAAATGACACTATTATCCTAAATGGCAGGAGAAATAGAACTTCAGAATCA

                
       2348 AAGG
         66 AAGG

                                                                             
       2352 AGATATTCAAAGAAGCAAATGACACTATTATCCTAAATGGCAGGAGAAATAGAACTTCAGAATCA
          1 AGATATTCAAAGAAGCAAATGACACTATTATCCTAAATGGCAGGAGAAATAGAACTTCAGAATCA

                
       2417 AAGG
         66 AAGG

              
       2421 AG
          1 AG

       2423 CAATATTTTC


Statistics
Matches: 71,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  69   71  1.00

ACGTcount: A:0.46, C:0.14, G:0.19, T:0.20


Consensus pattern (69 bp):   
AGATATTCAAAGAAGCAAATGACACTATTATCCTAAATGGCAGGAGAAATAGAACTTCAGAATCA
AAGG

Done.