Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007900.1 Kokia drynarioides strain JFW-HI SEQ_122541, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8675
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.34


Found at i:5310 original size:18 final size:18

Alignment explanation


    Indices: 5287--5322  Score: 63
    Period size: 18  Copynumber: 2.0  Consensus size: 18

       5277 TGGCAATGCA

                              
       5287 ATATTGTTACAATAAAGC
          1 ATATTGTTACAATAAAGC

                       *      
       5305 ATATTGTTACAGTAAAGC
          1 ATATTGTTACAATAAAGC

       5323 TTGATTGAAA


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  18   17  1.00

ACGTcount: A:0.42, C:0.11, G:0.14, T:0.33


Consensus pattern (18 bp):   
ATATTGTTACAATAAAGC

Found at i:8630 original size:101 final size:100

Alignment explanation


    Indices: 8400--8616  Score: 305
    Period size: 101  Copynumber: 2.2  Consensus size: 100

       8390 TGACTTTAAT

                                                       *                     
       8400 AAAAAACACTTGAAGATTAAATTTTAAAACTTCATAAAGTACATGGACTGAAGGAAGAATTGAAC
          1 AAAAAACACTTGAAGATTAAA---TAAAACTTCATAAAGTACAGGGACTGAAGGAAGAATTGAAC

                   *                   *           
       8465 CTAATAGTTGAGGAGCTACTAGAAAGATACTTGAAGTAA
         63 CTAATAGCTGA-GAGCTACTAGAAAGACACTTGAAGTAA

                                      *       *         *      *             
       8504 AAAAAACACTTGAAGATTAAATAAAAGTTCATAACGTACAGGGATTGAAGGTAGAATTGAACCTA
          1 AAAAAACACTTGAAGATTAAATAAAACTTCATAAAGTACAGGGACTGAAGGAAGAATTGAACCTA

                          *                    
       8569 ATAGCT-A-AGCTATTAGAAAGACACTTGAAGT-A
         66 ATAGCTGAGAGCTACTAGAAAGACACTTGAAGTAA

                            
       8601 AAAAAACACTTGAAGA
          1 AAAAAACACTTGAAGA

       8617 CGTTATCACT


Statistics
Matches: 105,  Mismatches: 8, Indels: 7
        0.88            0.07        0.06

Matches are distributed among these distances:
  97   17  0.16
  98   22  0.21
 100    1  0.01
 101   44  0.42
 104   21  0.20

ACGTcount: A:0.47, C:0.11, G:0.18, T:0.24


Consensus pattern (100 bp):   
AAAAAACACTTGAAGATTAAATAAAACTTCATAAAGTACAGGGACTGAAGGAAGAATTGAACCTA
ATAGCTGAGAGCTACTAGAAAGACACTTGAAGTAA
Done.