Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007902.1 Kokia drynarioides strain JFW-HI SEQ_122543, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6327
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.35


Found at i:5163 original size:6 final size:6

Alignment explanation


    Indices: 5141--5184  Score: 52
    Period size: 6  Copynumber: 7.3  Consensus size: 6

       5131 ACCAAACATT

                        *        *           *          *      
       5141 ATCTTG ATCTTC ATCTTG GTCTTG ATCTTT ATCTTG ATATTG AT
          1 ATCTTG ATCTTG ATCTTG ATCTTG ATCTTG ATCTTG ATCTTG AT

       5185 AGACATCCAT


Statistics
Matches: 31,  Mismatches: 7, Indels: 0
        0.82            0.18        0.00

Matches are distributed among these distances:
   6   31  1.00

ACGTcount: A:0.18, C:0.16, G:0.14, T:0.52


Consensus pattern (6 bp):   
ATCTTG

Found at i:5165 original size:18 final size:18

Alignment explanation


    Indices: 5142--5176  Score: 61
    Period size: 18  Copynumber: 1.9  Consensus size: 18

       5132 CCAAACATTA

                              
       5142 TCTTGATCTTCATCTTGG
          1 TCTTGATCTTCATCTTGG

                      *      
       5160 TCTTGATCTTTATCTTG
          1 TCTTGATCTTCATCTTG

       5177 ATATTGATAG


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  18   16  1.00

ACGTcount: A:0.11, C:0.20, G:0.14, T:0.54


Consensus pattern (18 bp):   
TCTTGATCTTCATCTTGG

Found at i:6252 original size:3 final size:3

Alignment explanation


    Indices: 6244--6287  Score: 88
    Period size: 3  Copynumber: 14.7  Consensus size: 3

       6234 CCATTACCAT

                                                                      
       6244 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
          1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT

       6288 TAAGGTAAAA


Statistics
Matches: 41,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   41  1.00

ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68


Consensus pattern (3 bp):   
TTA

Done.