Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007908.1 Kokia drynarioides strain JFW-HI SEQ_122550, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 28160
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32

Warning! 10 characters in sequence are not A, C, G, or T


Found at i:17744 original size:16 final size:17

Alignment explanation


    Indices: 17713--17746  Score: 52
    Period size: 16  Copynumber: 2.1  Consensus size: 17

      17703 AAATTAATTA

                             
      17713 ATTTTTAATATATTTTT
          1 ATTTTTAATATATTTTT

                       *     
      17730 ATTTTTAA-ATTTTTTT
          1 ATTTTTAATATATTTTT

             
      17746 A
          1 A

      17747 GAATTATTAT


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  16    8  0.50
  17    8  0.50

ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71


Consensus pattern (17 bp):   
ATTTTTAATATATTTTT
Done.