Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007915.1 Kokia drynarioides strain JFW-HI SEQ_122559, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9569
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.36


Found at i:1403 original size:20 final size:20

Alignment explanation


    Indices: 1347--1393  Score: 85
    Period size: 20  Copynumber: 2.4  Consensus size: 20

       1337 TTATATCATT

                     *          
       1347 AATTTTATCATAAATTTCAA
          1 AATTTTATCTTAAATTTCAA

                                
       1367 AATTTTATCTTAAATTTCAA
          1 AATTTTATCTTAAATTTCAA

                   
       1387 AATTTTA
          1 AATTTTA

       1394 ATTTGAATTT


Statistics
Matches: 26,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  20   26  1.00

ACGTcount: A:0.43, C:0.09, G:0.00, T:0.49


Consensus pattern (20 bp):   
AATTTTATCTTAAATTTCAA

Found at i:3241 original size:17 final size:17

Alignment explanation


    Indices: 3216--3254  Score: 51
    Period size: 17  Copynumber: 2.3  Consensus size: 17

       3206 ATAATATTAC

                *         *  
       3216 TATTCTTTTAAAAATAA
          1 TATTTTTTTAAAAACAA

                        *    
       3233 TATTTTTTTAAACACAA
          1 TATTTTTTTAAAAACAA

                 
       3250 TATTT
          1 TATTT

       3255 AAAATTATCC


Statistics
Matches: 19,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  17   19  1.00

ACGTcount: A:0.41, C:0.08, G:0.00, T:0.51


Consensus pattern (17 bp):   
TATTTTTTTAAAAACAA
Done.