genome.fa.s7916.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01007916.1 Kokia drynarioides strain JFW-HI SEQ_122560, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68753

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2301--2339	17	2.3	17	86	0	51	51	0	7	41	1.31
2351--2404	24	2.3	23	81	9	56	53	5	0	40	1.24
13315--13575	62	4.2	62	88	2	355	32	13	21	32	1.92
17920--18081	45	3.5	45	90	5	252	30	27	8	32	1.87
17920--18087	48	3.6	47	88	7	245	30	28	8	32	1.87
17920--18091	93	1.8	93	88	2	256	30	29	8	31	1.86
22867--22957	46	1.9	46	82	10	112	37	10	9	41	1.74
28174--28213	11	3.6	11	83	12	55	60	0	2	37	1.11
29086--29114	11	2.7	11	94	5	51	62	0	0	37	0.96
35600--35641	22	2.0	22	90	9	70	47	0	0	52	1.00
36149--36209	23	2.7	23	86	0	86	4	21	22	50	1.67
39585--39735	30	5.1	30	73	11	105	35	5	18	40	1.75
39583--39721	58	2.3	60	85	6	176	34	5	20	39	1.76
40162--40188	13	2.1	13	100	0	54	14	44	18	22	1.86
41499--41601	46	2.2	46	84	3	127	27	16	23	33	1.96
41514--41611	46	2.1	47	81	3	110	27	18	20	33	1.96
41734--41825	48	1.9	48	88	0	139	22	16	16	44	1.86
41675--41900	123	1.8	123	91	0	371	22	17	19	41	1.90
41782--41975	75	2.6	75	88	1	282	20	16	20	43	1.88
41874--43146	123	10.4	123	82	4	1316	22	19	17	41	1.91
41675--42098	198	2.1	199	85	3	579	21	17	19	41	1.90
42951--43351	202	2.0	202	83	2	511	24	18	17	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43148--44038	123	7.2	123	82	1	964	22	18	16	42	1.89
42707--43516	447	1.8	448	85	2	1135	22	18	17	41	1.90
43361--43452	48	1.9	48	84	0	121	22	21	15	40	1.91
44264--44550	49	5.9	49	71	6	197	21	25	16	36	1.93
44257--44492	97	2.4	98	77	5	262	20	26	16	36	1.93
45759--45798	7	5.3	7	85	14	53	0	20	0	80	0.72
45745--45801	23	2.5	22	80	8	69	1	19	0	78	0.83
45746--45799	16	3.3	16	82	17	67	1	18	0	79	0.82
45746--45799	17	3.3	15	82	12	63	1	18	0	79	0.82
49976--50018	14	3.2	14	87	6	54	76	4	0	18	0.95
50176--50359	30	6.2	29	71	8	104	35	5	22	35	1.79
50179--50359	60	3.0	57	77	10	159	34	6	23	36	1.79
57261--57307	20	2.3	20	81	3	58	34	6	14	44	1.71
60256--60285	13	2.3	13	100	0	60	40	0	0	60	0.97
61858--61915	31	1.9	31	86	10	84	36	1	17	44	1.59
64334--64388	24	2.3	24	83	0	74	45	3	1	49	1.30
67948--67973	11	2.4	11	100	0	52	26	0	7	65	1.20

Tables:   1

The End!