Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007918.1 Kokia drynarioides strain JFW-HI SEQ_122562, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5277
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.34


Found at i:3319 original size:15 final size:15

Alignment explanation


    Indices: 3299--3330  Score: 64
    Period size: 15  Copynumber: 2.1  Consensus size: 15

       3289 AATCATTCGT

                           
       3299 AAAAAGTAAATGTGA
          1 AAAAAGTAAATGTGA

                           
       3314 AAAAAGTAAATGTGA
          1 AAAAAGTAAATGTGA

              
       3329 AA
          1 AA

       3331 TTTGAGGCTC


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   17  1.00

ACGTcount: A:0.62, C:0.00, G:0.19, T:0.19


Consensus pattern (15 bp):   
AAAAAGTAAATGTGA
Done.