Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007922.1 Kokia drynarioides strain JFW-HI SEQ_122567, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13745
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34


Found at i:7096 original size:21 final size:22

Alignment explanation


    Indices: 7065--7106  Score: 59
    Period size: 21  Copynumber: 2.0  Consensus size: 22

       7055 ATTCACATGT

                                  
       7065 TTTCTTACTCATGATTCTTTTG
          1 TTTCTTACTCATGATTCTTTTG

                        **       
       7087 TTTC-TACTCATTTTTCTTTT
          1 TTTCTTACTCATGATTCTTTT

       7107 ATTTTTTATT


Statistics
Matches: 18,  Mismatches: 2, Indels: 1
        0.86            0.10        0.05

Matches are distributed among these distances:
  21   14  0.78
  22    4  0.22

ACGTcount: A:0.12, C:0.19, G:0.05, T:0.64


Consensus pattern (22 bp):   
TTTCTTACTCATGATTCTTTTG

Found at i:12528 original size:12 final size:12

Alignment explanation


    Indices: 12511--12546  Score: 72
    Period size: 12  Copynumber: 3.0  Consensus size: 12

      12501 TTTTAAAGAG

                        
      12511 CATAAAATAAAA
          1 CATAAAATAAAA

                        
      12523 CATAAAATAAAA
          1 CATAAAATAAAA

                        
      12535 CATAAAATAAAA
          1 CATAAAATAAAA

      12547 GCAAAAGTTT


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   24  1.00

ACGTcount: A:0.75, C:0.08, G:0.00, T:0.17


Consensus pattern (12 bp):   
CATAAAATAAAA
Done.