Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007925.1 Kokia drynarioides strain JFW-HI SEQ_122570, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2704
ACGTcount: A:0.34, C:0.13, G:0.17, T:0.36


Found at i:35 original size:24 final size:24

Alignment explanation


    Indices: 3--63  Score: 95
    Period size: 24  Copynumber: 2.5  Consensus size: 24

          1 GA

                               *    
          3 AGTTTAATTGAAACAAATAGACAG
          1 AGTTTAATTGAAACAAATAAACAG

                           *        
         27 AGTTTAATTGAAACATATAAACAG
          1 AGTTTAATTGAAACAAATAAACAG

                   *     
         51 AGTTTAACTGAAA
          1 AGTTTAATTGAAA

         64 GATTATTTCT


Statistics
Matches: 34,  Mismatches: 3, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  24   34  1.00

ACGTcount: A:0.49, C:0.08, G:0.15, T:0.28


Consensus pattern (24 bp):   
AGTTTAATTGAAACAAATAAACAG

Found at i:2445 original size:14 final size:15

Alignment explanation


    Indices: 2420--2453  Score: 52
    Period size: 14  Copynumber: 2.3  Consensus size: 15

       2410 AAATTATACT

                         * 
       2420 TAAATAACACTAATA
          1 TAAATAACACTAAGA

                           
       2435 TAAAT-ACACTAAGA
          1 TAAATAACACTAAGA

                 
       2449 TAAAT
          1 TAAAT

       2454 TAAAATAAAT


Statistics
Matches: 18,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  14   13  0.72
  15    5  0.28

ACGTcount: A:0.59, C:0.12, G:0.03, T:0.26


Consensus pattern (15 bp):   
TAAATAACACTAAGA
Done.