Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007927.1 Kokia drynarioides strain JFW-HI SEQ_122572, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3465
ACGTcount: A:0.33, C:0.22, G:0.13, T:0.32


Found at i:1857 original size:24 final size:24

Alignment explanation


    Indices: 1829--1889  Score: 95
    Period size: 24  Copynumber: 2.5  Consensus size: 24

       1819 AGAAATAATC

                 *           *      
       1829 TTTCAGTTAAACTCTGTTTATATG
          1 TTTCAATTAAACTCTGTCTATATG

                                 *  
       1853 TTTCAATTAAACTCTGTCTATTTG
          1 TTTCAATTAAACTCTGTCTATATG

                         
       1877 TTTCAATTAAACT
          1 TTTCAATTAAACT

       1890 TCCAACACTT


Statistics
Matches: 34,  Mismatches: 3, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  24   34  1.00

ACGTcount: A:0.28, C:0.15, G:0.08, T:0.49


Consensus pattern (24 bp):   
TTTCAATTAAACTCTGTCTATATG
Done.