Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007939.1 Kokia drynarioides strain JFW-HI SEQ_122586, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 16495
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.30


Found at i:4758 original size:34 final size:34

Alignment explanation


    Indices: 4715--4784  Score: 113
    Period size: 34  Copynumber: 2.1  Consensus size: 34

       4705 TAAATATACA

                           *    * *           
       4715 AACAATCGATTTAAATGAAGTAGTATTCCAACAT
          1 AACAATCGATTTAAAAGAAGCAATATTCCAACAT

                                              
       4749 AACAATCGATTTAAAAGAAGCAATATTCCAACAT
          1 AACAATCGATTTAAAAGAAGCAATATTCCAACAT

              
       4783 AA
          1 AA

       4785 AAATTTATTC


Statistics
Matches: 33,  Mismatches: 3, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  34   33  1.00

ACGTcount: A:0.49, C:0.16, G:0.10, T:0.26


Consensus pattern (34 bp):   
AACAATCGATTTAAAAGAAGCAATATTCCAACAT
Done.