Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007940.1 Kokia drynarioides strain JFW-HI SEQ_122587, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4291
ACGTcount: A:0.34, C:0.20, G:0.14, T:0.33


Found at i:1024 original size:22 final size:23

Alignment explanation


    Indices: 999--1044  Score: 67
    Period size: 23  Copynumber: 2.0  Consensus size: 23

        989 TTCACTAGGC

                        *          
        999 TCCCCT-CCTTTGATTTTGTTCA
          1 TCCCCTACCTTTCATTTTGTTCA

                    *              
       1021 TCCCCTACTTTTCATTTTGTTCA
          1 TCCCCTACCTTTCATTTTGTTCA

             
       1044 T
          1 T

       1045 ATGTTTTGTT


Statistics
Matches: 21,  Mismatches: 2, Indels: 1
        0.88            0.08        0.04

Matches are distributed among these distances:
  22    6  0.29
  23   15  0.71

ACGTcount: A:0.11, C:0.30, G:0.07, T:0.52


Consensus pattern (23 bp):   
TCCCCTACCTTTCATTTTGTTCA
Done.