Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007946.1 Kokia drynarioides strain JFW-HI SEQ_122594, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6104
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.31


Found at i:2404 original size:31 final size:31

Alignment explanation


    Indices: 2366--2426  Score: 104
    Period size: 31  Copynumber: 2.0  Consensus size: 31

       2356 TCCTTAATTA

                         *                 
       2366 AGAGATTCACTGATTTTAACTTTTAATTCCC
          1 AGAGATTCACTGAGTTTAACTTTTAATTCCC

                        *                 
       2397 AGAGATTCACTGGGTTTAACTTTTAATTCC
          1 AGAGATTCACTGAGTTTAACTTTTAATTCC

       2427 AATATATATC


Statistics
Matches: 28,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  31   28  1.00

ACGTcount: A:0.28, C:0.18, G:0.13, T:0.41


Consensus pattern (31 bp):   
AGAGATTCACTGAGTTTAACTTTTAATTCCC
Done.