Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007953.1 Kokia drynarioides strain JFW-HI SEQ_122601, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3640
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32


Found at i:1198 original size:31 final size:31

Alignment explanation


    Indices: 1134--1199  Score: 80
    Period size: 31  Copynumber: 2.1  Consensus size: 31

       1124 GTTGAAAAAC

                                   *    *  
       1134 AATTCAACTCTTTTTAAAGGAATGAGGGTCA
          1 AATTCAACTCTTTTTAAAGGAATAAGGGACA

                     *            *         
       1165 AATTCAACTTTTTTTAAATGG-TTAAGGGACA
          1 AATTCAACTCTTTTTAAA-GGAATAAGGGACA

                
       1196 AATT
          1 AATT

       1200 TAGTTAAAAA


Statistics
Matches: 30,  Mismatches: 4, Indels: 2
        0.83            0.11        0.06

Matches are distributed among these distances:
  31   28  0.93
  32    2  0.07

ACGTcount: A:0.36, C:0.11, G:0.17, T:0.36


Consensus pattern (31 bp):   
AATTCAACTCTTTTTAAAGGAATAAGGGACA
Done.