Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007976.1 Kokia drynarioides strain JFW-HI SEQ_122626, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3144
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.33


Found at i:2874 original size:38 final size:38

Alignment explanation


    Indices: 2832--2918  Score: 131
    Period size: 38  Copynumber: 2.3  Consensus size: 38

       2822 TTGGTACTAA

                                               *   
       2832 TGTCGTTGCATGAGTATTTTCAAATTTGC-TTCTAGGAT
          1 TGTCGTTGCATGAGTATTTTCAAATTTGCTTTC-AAGAT

                 *                                
       2870 TGTCGCTGCATGAGTATTTTCAAATTTGCTTTCAAGAT
          1 TGTCGTTGCATGAGTATTTTCAAATTTGCTTTCAAGAT

                  *    
       2908 TGTCGTCGCAT
          1 TGTCGTTGCAT

       2919 CTGACAACTA


Statistics
Matches: 44,  Mismatches: 4, Indels: 2
        0.88            0.08        0.04

Matches are distributed among these distances:
  38   41  0.93
  39    3  0.07

ACGTcount: A:0.21, C:0.16, G:0.21, T:0.43


Consensus pattern (38 bp):   
TGTCGTTGCATGAGTATTTTCAAATTTGCTTTCAAGAT
Done.