Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007980.1 Kokia drynarioides strain JFW-HI SEQ_122631, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8915
ACGTcount: A:0.33, C:0.20, G:0.15, T:0.31


Found at i:668 original size:24 final size:24

Alignment explanation


    Indices: 636--760  Score: 142
    Period size: 24  Copynumber: 5.2  Consensus size: 24

        626 GCGTGATCAC

                                    
        636 CAGCTAATGTACGTTTACGCTCGT
          1 CAGCTAATGTACGTTTACGCTCGT

                                    
        660 CAGCTAATGTACGTTTACGCTCGT
          1 CAGCTAATGTACGTTTACGCTCGT

                   *   *         *  
        684 CAGCTAAAGTATGTTTACGCTTGT
          1 CAGCTAATGTACGTTTACGCTCGT

              *  ** *         *     
        708 CAACTTCTATACGTTTACACTCGT
          1 CAGCTAATGTACGTTTACGCTCGT

              *  **     *           
        732 CAACTTCTGTACATTTACGCTCGT
          1 CAGCTAATGTACGTTTACGCTCGT

                 
        756 CAGCT
          1 CAGCT

        761 TTTCAGATAT


Statistics
Matches: 86,  Mismatches: 15, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  24   86  1.00

ACGTcount: A:0.22, C:0.26, G:0.17, T:0.35


Consensus pattern (24 bp):   
CAGCTAATGTACGTTTACGCTCGT

Done.