Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007993.1 Kokia drynarioides strain JFW-HI SEQ_122645, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9487
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.36


Found at i:6382 original size:27 final size:26

Alignment explanation


    Indices: 6330--6383  Score: 63
    Period size: 26  Copynumber: 2.0  Consensus size: 26

       6320 ATGCATGCAA

                                 *    
       6330 TATATTCAAAATATATAAATATATAT
          1 TATATTCAAAATATATAAATAAATAT

                   *       *  *        
       6356 TATATTCCAAATAGTTTATATAAATAT
          1 TATATTCAAAATA-TATAAATAAATAT

             
       6383 T
          1 T

       6384 TAAAAGGTGT


Statistics
Matches: 23,  Mismatches: 4, Indels: 1
        0.82            0.14        0.04

Matches are distributed among these distances:
  26   12  0.52
  27   11  0.48

ACGTcount: A:0.48, C:0.06, G:0.02, T:0.44


Consensus pattern (26 bp):   
TATATTCAAAATATATAAATAAATAT
Done.