Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007994.1 Kokia drynarioides strain JFW-HI SEQ_122646, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5441
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32


Found at i:4614 original size:36 final size:36

Alignment explanation


    Indices: 4567--4675  Score: 209
    Period size: 36  Copynumber: 3.0  Consensus size: 36

       4557 AATTGTCAAA

                                                
       4567 ATATATCAAAAATGCCCTTTAACCGTTAATTTTAAT
          1 ATATATCAAAAATGCCCTTTAACCGTTAATTTTAAT

                  *                             
       4603 ATATATAAAAAATGCCCTTTAACCGTTAATTTTAAT
          1 ATATATCAAAAATGCCCTTTAACCGTTAATTTTAAT

                                                
       4639 ATATATCAAAAATGCCCTTTAACCGTTAATTTTAAT
          1 ATATATCAAAAATGCCCTTTAACCGTTAATTTTAAT

             
       4675 A
          1 A

       4676 GTTGATCGTT


Statistics
Matches: 71,  Mismatches: 2, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  36   71  1.00

ACGTcount: A:0.40, C:0.16, G:0.06, T:0.39


Consensus pattern (36 bp):   
ATATATCAAAAATGCCCTTTAACCGTTAATTTTAAT

Found at i:4903 original size:19 final size:19

Alignment explanation


    Indices: 4871--4913  Score: 52
    Period size: 19  Copynumber: 2.3  Consensus size: 19

       4861 TTTTTATGAC

                                
       4871 TTTTATAAAATTTTAC-AAT
          1 TTTTATAAAATTTT-CTAAT

                    **         
       4890 TTTTATAATTTTTTCTAAT
          1 TTTTATAAAATTTTCTAAT

                 
       4909 TTTTA
          1 TTTTA

       4914 ATATTTTTAT


Statistics
Matches: 21,  Mismatches: 2, Indels: 2
        0.84            0.08        0.08

Matches are distributed among these distances:
  18    1  0.05
  19   20  0.95

ACGTcount: A:0.33, C:0.05, G:0.00, T:0.63


Consensus pattern (19 bp):   
TTTTATAAAATTTTCTAAT
Done.