Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007995.1 Kokia drynarioides strain JFW-HI SEQ_122647, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6449
ACGTcount: A:0.34, C:0.15, G:0.18, T:0.33


Found at i:1083 original size:15 final size:13

Alignment explanation


    Indices: 1063--1103  Score: 50
    Period size: 15  Copynumber: 3.2  Consensus size: 13

       1053 TAAAAACATA

                           
       1063 ATATAATATATATAT
          1 ATATAAT-TATA-AT

                         
       1078 ATATAATTATAAT
          1 ATATAATTATAAT

                         
       1091 A-ATAATT-TAAT
          1 ATATAATTATAAT

              
       1102 AT
          1 AT

       1104 TTGTAAAAAA


Statistics
Matches: 25,  Mismatches: 0, Indels: 5
        0.83            0.00        0.17

Matches are distributed among these distances:
  11    5  0.20
  12    6  0.24
  13    3  0.12
  14    4  0.16
  15    7  0.28

ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46


Consensus pattern (13 bp):   
ATATAATTATAAT

Found at i:6432 original size:2 final size:2

Alignment explanation


    Indices: 6425--6449  Score: 50
    Period size: 2  Copynumber: 12.5  Consensus size: 2

       6415 AAAAATCAAG

                                                 
       6425 TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA T


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   23  1.00

ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52


Consensus pattern (2 bp):   
TA

Done.