Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008004.1 Kokia drynarioides strain JFW-HI SEQ_122656, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2125
ACGTcount: A:0.40, C:0.10, G:0.13, T:0.37


Found at i:1201 original size:20 final size:20

Alignment explanation


    Indices: 1156--1255  Score: 76
    Period size: 20  Copynumber: 4.9  Consensus size: 20

       1146 GTTTGAAACA

                           *      
       1156 ATTTTAAAATCAAGTTAAAATG
          1 ATTTT-AAA-CAAGTCAAAATG

                      *        *
       1178 ATTTTAAACATGTCAAAATA
          1 ATTTTAAACAAGTCAAAATG

                *  *   *       *
       1198 ATTTGAACCAAATCAAAATC
          1 ATTTTAAACAAGTCAAAATG

                      **        
       1218 ATTTT-AACACTTCAAAATG
          1 ATTTTAAACAAGTCAAAATG

            *                  
       1237 TTTTTCAAACAAGTCAAAA
          1 ATTTT-AAACAAGTCAAAA

       1256 GGGAAGAAGA


Statistics
Matches: 60,  Mismatches: 16, Indels: 5
        0.74            0.20        0.06

Matches are distributed among these distances:
  19   14  0.23
  20   28  0.47
  21   13  0.22
  22    5  0.08

ACGTcount: A:0.48, C:0.13, G:0.06, T:0.33


Consensus pattern (20 bp):   
ATTTTAAACAAGTCAAAATG
Done.