Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008005.1 Kokia drynarioides strain JFW-HI SEQ_122658, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9714
ACGTcount: A:0.36, C:0.16, G:0.17, T:0.32


Found at i:320 original size:2 final size:2

Alignment explanation


    Indices: 315--344  Score: 60
    Period size: 2  Copynumber: 15.0  Consensus size: 2

        305 TGAACGAATA

                                                        
        315 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

        345 TCAAAAAGCA


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   28  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
AT

Found at i:3337 original size:3 final size:3

Alignment explanation


    Indices: 3323--3358  Score: 63
    Period size: 3  Copynumber: 12.0  Consensus size: 3

       3313 TCTGTAGACT

                  *                                        
       3323 TTG TTT TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG
          1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG

       3359 CAGTTGTGGT


Statistics
Matches: 31,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   3   31  1.00

ACGTcount: A:0.00, C:0.00, G:0.31, T:0.69


Consensus pattern (3 bp):   
TTG

Found at i:4096 original size:2 final size:2

Alignment explanation


    Indices: 4091--4128  Score: 55
    Period size: 2  Copynumber: 20.5  Consensus size: 2

       4081 ACACACACAC

                                                                         
       4091 AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT A- AT A- AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A

       4129 CAAGAATAAG


Statistics
Matches: 33,  Mismatches: 0, Indels: 6
        0.85            0.00        0.15

Matches are distributed among these distances:
   1    3  0.09
   2   30  0.91

ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47


Consensus pattern (2 bp):   
AT

Done.