Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008007.1 Kokia drynarioides strain JFW-HI SEQ_122660, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7126
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.35


Found at i:6933 original size:16 final size:17

Alignment explanation


    Indices: 6912--6947  Score: 56
    Period size: 16  Copynumber: 2.2  Consensus size: 17

       6902 TGATGCGTAA

                             
       6912 ATATAATATAATAA-AT
          1 ATATAATATAATAAGAT

                      *      
       6928 ATATAATATACTAAGAT
          1 ATATAATATAATAAGAT

               
       6945 ATA
          1 ATA

       6948 AGCAAATAAT


Statistics
Matches: 18,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  16   13  0.72
  17    5  0.28

ACGTcount: A:0.58, C:0.03, G:0.03, T:0.36


Consensus pattern (17 bp):   
ATATAATATAATAAGAT
Done.