Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000801.1 Kokia drynarioides strain JFW-HI SEQ_111872, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 818

Length: 1364
ACGTcount: A:0.33, C:0.14, G:0.21, T:0.32


Found at i:1308 original size:100 final size:100

Alignment explanation


    Indices: 1133--1332  Score: 287
    Period size: 100  Copynumber: 2.0  Consensus size: 100

       1123 AAGTACGAGG

                                                             *               
       1133 TCCTTAGTGAATGAATGTGAAGTCAAATTTTGATTCGACCGAAAAAATTGAGAGTTACGAGCATT
          1 TCCTTAGTGAATGAATGTGAAGTCAAATTTTGATTCGACCGAAAAAATTAAGAGTTACGAGCATT

               *            *                  
       1198 TCATACATTATGGTTTGAAAGGGGACTTAATTGTA
         66 TCAGACATTATGGTTTAAAAGGGGACTTAATTGTA

                                    ***             *  *                     
       1233 TCCTTAGTGAATGAATGTGAAGTCGGGTTTTGATTCGATCTG-GAAAATTAAGA-TATACGAGCA
          1 TCCTTAGTGAATGAATGTGAAGTCAAATTTTGATTCGA-CCGAAAAAATTAAGAGT-TACGAGCA

                   *                             
       1296 TTTCAGATATTATGGTTTAAAAGGGGACTTAATTGTA
         64 TTTCAGACATTATGGTTTAAAAGGGGACTTAATTGTA

       1333 AAAATACAAA


Statistics
Matches: 89,  Mismatches: 9, Indels: 4
        0.87            0.09        0.04

Matches are distributed among these distances:
  99    1  0.01
 100   86  0.97
 101    2  0.02

ACGTcount: A:0.33, C:0.10, G:0.23, T:0.34


Consensus pattern (100 bp):   
TCCTTAGTGAATGAATGTGAAGTCAAATTTTGATTCGACCGAAAAAATTAAGAGTTACGAGCATT
TCAGACATTATGGTTTAAAAGGGGACTTAATTGTA
Done.