Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008012.1 Kokia drynarioides strain JFW-HI SEQ_122666, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7118
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.32


Found at i:1675 original size:21 final size:22

Alignment explanation


    Indices: 1651--1695  Score: 56
    Period size: 21  Copynumber: 2.1  Consensus size: 22

       1641 AAAGTTTTAA

                       *          
       1651 TTATACATTTATCTA-TTTATT
          1 TTATACATTTAACTATTTTATT

                **                
       1672 TTATTTATTTAACTATTTTATT
          1 TTATACATTTAACTATTTTATT

              
       1694 TT
          1 TT

       1696 TCTTATGAAG


Statistics
Matches: 20,  Mismatches: 3, Indels: 1
        0.83            0.12        0.04

Matches are distributed among these distances:
  21   12  0.60
  22    8  0.40

ACGTcount: A:0.27, C:0.07, G:0.00, T:0.67


Consensus pattern (22 bp):   
TTATACATTTAACTATTTTATT
Done.