Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008013.1 Kokia drynarioides strain JFW-HI SEQ_122667, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7570
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.34


Found at i:7522 original size:18 final size:18

Alignment explanation


    Indices: 7499--7564  Score: 91
    Period size: 17  Copynumber: 3.7  Consensus size: 18

       7489 CAAACTCCCT

                              
       7499 TTAAATTTATTTTAAAAA
          1 TTAAATTTATTTTAAAAA

                     *        
       7517 TTAAATTT-GTTTAAAAA
          1 TTAAATTTATTTTAAAAA

                              *
       7534 TTTAAATTTATTTT-AAAT
          1 -TTAAATTTATTTTAAAAA

                         
       7552 TTAAATTTATTTT
          1 TTAAATTTATTTT

       7565 GAATTT


Statistics
Matches: 43,  Mismatches: 3, Indels: 5
        0.84            0.06        0.10

Matches are distributed among these distances:
  17   21  0.49
  18   19  0.44
  19    3  0.07

ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56


Consensus pattern (18 bp):   
TTAAATTTATTTTAAAAA

Found at i:7564 original size:17 final size:17

Alignment explanation


    Indices: 7498--7570  Score: 92
    Period size: 18  Copynumber: 4.2  Consensus size: 17

       7488 CCAAACTCCC

                              
       7498 TTTAAATTTATTTTAAAA
          1 TTTAAATTTATTTT-AAA

            *        *    *   
       7516 ATTAAATTTGTTTAAAAA
          1 TTTAAATTTATTT-TAAA

                             
       7534 TTTAAATTTATTTTAAA
          1 TTTAAATTTATTTTAAA

                          *  
       7551 TTTAAATTTATTTTGAA
          1 TTTAAATTTATTTTAAA

               
       7568 TTT
          1 TTT


Statistics
Matches: 47,  Mismatches: 7, Indels: 3
        0.82            0.12        0.05

Matches are distributed among these distances:
  17   22  0.47
  18   25  0.53

ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56


Consensus pattern (17 bp):   
TTTAAATTTATTTTAAA
Done.