Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01008016.1 Kokia drynarioides strain JFW-HI SEQ_122670, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 7924
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.39
Found at i:333 original size:62 final size:62
Alignment explanation
Indices: 236--359 Score: 194
Period size: 62 Copynumber: 2.0 Consensus size: 62
226 GTTAATTAAT
* * *
236 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTATTTCACTCTTGGTTCTTGGACAAACATCCAAACTTGTCAAA
* * *
298 AACTTATTTACGTGAGAATTATTTCACTCTTGGTTCTTGGACGAACATCCGAACTTTTCAAA
1 AACTTATTTACGTGAGAATTATTTCACTCTTGGTTCTTGGACAAACATCCAAACTTGTCAAA
360 CTTTTACGGT
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 56 1.00
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTATTTCACTCTTGGTTCTTGGACAAACATCCAAACTTGTCAAA
Found at i:498 original size:278 final size:278
Alignment explanation
Indices: 1--627 Score: 796
Period size: 278 Copynumber: 2.3 Consensus size: 278
* * * * *
1 AACTTCCGAACTTATCAAAAACTTATTTACGTGAGAATTGTTTCTCTTTTGGTTTTTGGATGAAC
1 AACTTCCGAACTTGTCAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAAC
* * * *
66 TTTCGAACTTGTCAAACTTTCACGAGTTCTTTTATAAGTTAGGTTCCTTAAAGCATACAAGATAA
66 TTCCGAACTTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTGAAAGCATACAAGAGAA
* *
131 TCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTCGAGAAATCACACCATTTGGTCAAAATA
131 TCCAATCCTTTGAGCAAATTTCCAAACATTCCATGCTCGAGAAATCACACAATTTGGTCAAAATA
* * * * *
196 GTTTATCTTTTTGTAAACAAGTTTTGGATTG-TTAATTAATAACTTATTTACGTGAGAATTGTTT
196 GTTTATCTTTCTGTAAACAAGTTTTGG-TCGCTGAATTAAAAACTTATTTACGTGAGAATTGGTT
260 CTCTCTTGGTTCTTGGACA
260 CTCTCTTGGTTCTTGGACA
* *
279 AACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTATTTCACTCTTGGTTCTTGGACGAAC
1 AACTTCCGAACTTGTCAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAAC
* * * * * * *
344 ATCCGAACTTTTCAAACTTTTACG-GTTTTTTTTTATAACTTCA-GTTGCTGAAAGTATTCAAGA
66 TTCCGAACTTGTCAAACTTTCACGAG--TTCTTTTATAACTT-AGGTTCCTGAAAGCATACAAGA
* *** * * *
407 GGATCCAATCCTTTGAGC-AATTTTTGAACATTCCATGCTCGAGAAATCGCATAATTTGGTCTAA
128 GAATCCAATCCTTTGAGCAAATTTCCAAACATTCCATGCTCGAGAAATCACACAATTTGGTCAAA
* *
471 ATAGTTTGTCTTTCTGTAAACAAGTTTTGGTCGCTGAATTAAAAACTTATTTACTTGAGAATTGG
193 ATAGTTTATCTTTCTGTAAACAAGTTTTGGTCGCTGAATTAAAAACTTATTTACGTGAGAATTGG
* *
536 TTCTCTCTTGTTTCTTGGACG
258 TTCTCTCTTGGTTCTTGGACA
* * * * * *
557 AACTTTCGAACTTGTCGAAGACTTGTTTACGTGAGAATTGCTTT-TCTCTTAGTTCTTGGACGAA
1 AACTTCCGAACTTGTCAAAAACTTATTTACGTGAGAATT-ATTTCTCTCTTGGTTCTTGGACGAA
621 CTTCCGA
65 CTTCCGA
628 GATTATCAAA
Statistics
Matches: 299, Mismatches: 45, Indels: 10
0.84 0.13 0.03
Matches are distributed among these distances:
277 3 0.01
278 249 0.83
279 46 0.15
280 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.16, T:0.39
Consensus pattern (278 bp):
AACTTCCGAACTTGTCAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAAC
TTCCGAACTTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTGAAAGCATACAAGAGAA
TCCAATCCTTTGAGCAAATTTCCAAACATTCCATGCTCGAGAAATCACACAATTTGGTCAAAATA
GTTTATCTTTCTGTAAACAAGTTTTGGTCGCTGAATTAAAAACTTATTTACGTGAGAATTGGTTC
TCTCTTGGTTCTTGGACA
Found at i:675 original size:63 final size:62
Alignment explanation
Indices: 511--700 Score: 188
Period size: 62 Copynumber: 3.0 Consensus size: 62
501 TCGCTGAATT
** * * *
511 AAAAACTTATTTACT-TGAGAATTGGTTCTCTCTTGTTTCTTGGACGAACTTTCGAACTTGTC
1 AAAAACTTATTTA-TGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTATC
* * * * * *
573 GAAGACTTGTTTACGTGAGAATTGCTTT-TCTCTTAGTTCTTGGACGAACTTCCGAGA-TTATC
1 AAAAACTTATTTATGTGAGAATT-ATTTCTCTCTTGGTTCTTGGACGAACTTCCGA-ACTTATC
* * * *
635 AAAAACTTATTTTATGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCTGAACTTGTC
1 AAAAACTTA-TTTATGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTATC
698 AAA
1 AAA
701 CTTTTACGAT
Statistics
Matches: 102, Mismatches: 20, Indels: 11
0.77 0.15 0.08
Matches are distributed among these distances:
62 56 0.55
63 46 0.45
ACGTcount: A:0.26, C:0.17, G:0.17, T:0.40
Consensus pattern (62 bp):
AAAAACTTATTTATGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTATC
Found at i:864 original size:341 final size:340
Alignment explanation
Indices: 237--913 Score: 990
Period size: 341 Copynumber: 2.0 Consensus size: 340
227 TTAATTAATA
* *
237 ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCAAACTTGTCAAAAACT
1 ACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACAAACTTCCAAACTTATCAAAAACT
* *
302 TATTTACGTGAGAATTATTTCACTCTTGGTTCTTGGACGAACATCCGAACTTTTCAAACTTTTAC
66 TATTTACGTAAGAATTATTTCACTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTAC
* * * * *
367 GGTTTTTTTTTATAACTTCAGTTGCTGAAAGTATTCAAGAGGATCCAATCCTTTGAGCAATTTTT
131 GGATTTCTTTTATAACTTCAGCTCCCGAAAGTATTCAAGAGGATCCAATCCTTTGAGCAATTTTT
432 GAACATTCCATGCTCGAGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTCTGTAAACAAGTT
196 GAACATTCCATGCTCGAGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTCTGTAAACAAGTT
* * **
497 TTGGTCGCTGAATTAAAAACTTATTTACTTGAGAATTGGTTCTCTCTTGTTTCTTGGACGAAC-T
261 TTGGTCGCTGAATTAAAAACTTATTTACGTAAGAATTGGTTCTCTCTTGGATCTTGGACGAACAT
*
561 TTCGAACTTGTCGAAG
326 CT-GAACTTGTCGAAG
* * *
577 ACTTGTTTACGTGAGAATTGCTTT-TCTCTTAGTTCTTGGACGAACTTCCGAGA-TTATCAAAAA
1 ACTTATTTACGTGAGAATTG-TTTCTCTCTTAGTTCTTGGACAAACTTCC-AAACTTATCAAAAA
* * *
640 CTTATTTTATGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCTGAACTTGTCAAACTTT
64 CTTA-TTTACGTAAGAATTATTTCACTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTT
* *
705 TAC-GATTTCTTTTATAACTTCGGCTCCCGAAAGTATTCAAGAGGATCCATTCCTTTGAGCAATT
128 TACGGATTTCTTTTATAACTTCAGCTCCCGAAAGTATTCAAGAGGATCCAATCCTTTGAGCAA-T
* * *
769 TTTTGACCATTCCATGCTCTG-GAAATCAG-ATAATTTGGTCTCAAA-AGTTTTTCTTTTTGTAA
192 TTTTGAACATTCCATGCTC-GAGAAATC-GCATAATTTGGTCT-AAATAGTTTGTCTTTCTGTAA
* *
831 GCAAGTTTTGGTCGCTGAATTAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGATCTTGGA
254 ACAAGTTTTGGTCGCTGAATTAAAAACTTATTTACGTAAGAATTGGTTCTCTCTTGGATCTTGGA
896 CGAACATCTGAACTTGTC
319 CGAACATCTGAACTTGTC
914 AAACTTTTAC
Statistics
Matches: 302, Mismatches: 27, Indels: 15
0.88 0.08 0.04
Matches are distributed among these distances:
340 107 0.35
341 188 0.62
342 7 0.02
ACGTcount: A:0.26, C:0.18, G:0.16, T:0.40
Consensus pattern (340 bp):
ACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACAAACTTCCAAACTTATCAAAAACT
TATTTACGTAAGAATTATTTCACTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTAC
GGATTTCTTTTATAACTTCAGCTCCCGAAAGTATTCAAGAGGATCCAATCCTTTGAGCAATTTTT
GAACATTCCATGCTCGAGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTCTGTAAACAAGTT
TTGGTCGCTGAATTAAAAACTTATTTACGTAAGAATTGGTTCTCTCTTGGATCTTGGACGAACAT
CTGAACTTGTCGAAG
Found at i:1024 original size:216 final size:215
Alignment explanation
Indices: 635--1115 Score: 642
Period size: 216 Copynumber: 2.2 Consensus size: 215
625 CGAGATTATC
*
635 AAAAACTTATTTTATGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCTGAACTTGTCAA
1 AAAAACTTA-TTTATGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCTGAACTTGTCAA
* * *
700 ACTTTTACGATTTCTTTTATAACTTCGGCTCCCGAAAGTATTCAAGAGGATCCATTCCTTTGAGC
65 ACTTTTACGATTACTTTTATAACTTCGGCTCCCGAAAGTATTCAAGACGATCCATTCCTTCGAGC
*** * * * *
765 AATTTTTTGACCATTCCATGCTCTGGAAATCAGATAATTTGGTCTCAAA-AGTTTTTCTTTTTGT
130 AATTTTCCAAACATTCCATGCTCTGGAAATCACATAATTTGGTCT-AAATAGTTTGTCATTTTG-
* *
829 AAGCAA-GTTTTGGTCGCTGAATT
193 AA-AAATATTTTGGTCGCTGAATT
* *
852 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGATCTTGGACGAACATCTGAACTTGTCAAA
1 AAAAACTTATTTATGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCTGAACTTGTCAAA
* ** ** *
917 CTTTTACGATTACTTTTATAACTTCGGTTCTTGAAAGTATTCTTGACGATCCATTCCTTCGAGCT
66 CTTTTACGATTACTTTTATAACTTCGGCTCCCGAAAGTATTCAAGACGATCCATTCCTTCGAGCA
* * *
982 ATTTTCCAAACATTCCTTGCTCTGGAAATCTCATGATTTGGTCTAAATAGTTTGTCATTTTGAAA
131 ATTTTCCAAACATTCCATGCTCTGGAAATCACATAATTTGGTCTAAATAGTTTGTCATTTTGAAA
**
1047 AATATTTTGGTCTTTGAATT
196 AATATTTTGGTCGCTGAATT
* * * *
1067 AAAAACTTATTAATGTGAGAACTGTTTCTCTCTTGGTTCTTGGAAGAAC
1 AAAAACTTATTTATGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
1116 TTTCGAACTT
Statistics
Matches: 230, Mismatches: 32, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
214 2 0.01
215 62 0.27
216 157 0.68
217 9 0.04
ACGTcount: A:0.27, C:0.17, G:0.15, T:0.40
Consensus pattern (215 bp):
AAAAACTTATTTATGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCTGAACTTGTCAAA
CTTTTACGATTACTTTTATAACTTCGGCTCCCGAAAGTATTCAAGACGATCCATTCCTTCGAGCA
ATTTTCCAAACATTCCATGCTCTGGAAATCACATAATTTGGTCTAAATAGTTTGTCATTTTGAAA
AATATTTTGGTCGCTGAATT
Found at i:1165 original size:62 final size:62
Alignment explanation
Indices: 1067--1193 Score: 182
Period size: 62 Copynumber: 2.0 Consensus size: 62
1057 TCTTTGAATT
* *
1067 AAAAACTTATTAATGTGAGAACTGTTTCTCTCTTGGTTCTTGGAAGAACTTTCGAACTTATC
1 AAAAACTTATTAACGTGAGAACTGTTTCTCTCTTGGTTCTTGGAAGAACTTTCAAACTTATC
* * * * * *
1129 AAAAACTTATTTACGTGAGAATTGTTTCTCTTTTGGTTCTTGGACGAGCTTTCAAACTTGTC
1 AAAAACTTATTAACGTGAGAACTGTTTCTCTCTTGGTTCTTGGAAGAACTTTCAAACTTATC
1191 AAA
1 AAA
1194 CTTTCACTAG
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
62 57 1.00
ACGTcount: A:0.28, C:0.16, G:0.17, T:0.39
Consensus pattern (62 bp):
AAAAACTTATTAACGTGAGAACTGTTTCTCTCTTGGTTCTTGGAAGAACTTTCAAACTTATC
Found at i:1374 original size:277 final size:277
Alignment explanation
Indices: 852--1470 Score: 752
Period size: 277 Copynumber: 2.2 Consensus size: 277
842 TCGCTGAATT
* * * *
852 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGATCTTGGACGAAC-ATCTGAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTC-AAACTTGTCAA
* * **
916 ACTTTTACGATTACTTTTATAACTTCGGTTCTTGAAAGTATTCTTGACGATCCATTCCTTCGAGC
65 ACTTTCACGATTACTTTTATAACTTAGGTTCTTGAAAGTATTCAAGACGATCCATTCCTTCGAGC
* * * * ** * *
981 TATTTTCCAAACATTCCTTGCTCTGGAAATCTCATGATTTGGTCTAAATAGTTTGTCATTTTGAA
130 AAATTTCCAAACATTCCGTGCTCTGGAAATCACACCATTTGGTCAAAAAAGTTTGTCATTTTGAA
* * * *
1046 AAATATTTTGGTCTTTGAATTAAAAACTTATTAATGTGAGAACTGTTTCTCTCTTGGTTCTTG-G
195 AAATATTTTGGACTTTGAATTAAAAACTTATTAACGTAAGAACTATTTCTCTCTTGGTTC-TGAG
* *
1110 AAGAACTTTCGAACTTATC
259 AAGAACTTCCAAACTTATC
* *
1129 AAAAACTTATTTACGTGAGAATTGTTTCTCTTTTGGTTCTTGGACGAGCTTTCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
* * * * *
1194 CTTTCACTAGTT-CTTTTATAATTTAGGTTCCTT-AAAGTATTCAAGATG-TTCATTCCTTTGAG
66 CTTTCACGA-TTACTTTTATAACTTAGGTT-CTTGAAAGTATTCAAGACGATCCATTCCTTCGAG
*
1256 CAAATTTCCAAACATTCCGTGCTC-GAGATATCACACCATTTGGTCAAAAAAGTTTGTCATTTTG
129 CAAATTTCCAAACATTCCGTGCTCTG-GAAATCACACCATTTGGTCAAAAAAGTTTGTCATTTTG
* * *
1320 TAAACAA-CTTTTGGACTGTT-AATTAATAACTTAGTT-ACGTAAGAATTATTTCTCTCTTGGTT
193 -AAA-AATATTTTGGACT-TTGAATTAAAAACTTA-TTAACGTAAGAACTATTTCTCTCTTGGTT
*
1382 CTGAGACGAACTTCCAAACTTATC
254 CTGAGAAGAACTTCCAAACTTATC
* * * *
1406 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTCGGTTCTTAGACGAACTTCCAGACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
1471 AACTTATTTA
Statistics
Matches: 293, Mismatches: 40, Indels: 18
0.83 0.11 0.05
Matches are distributed among these distances:
275 1 0.00
276 67 0.23
277 212 0.72
278 13 0.04
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.40
Consensus pattern (277 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
CTTTCACGATTACTTTTATAACTTAGGTTCTTGAAAGTATTCAAGACGATCCATTCCTTCGAGCA
AATTTCCAAACATTCCGTGCTCTGGAAATCACACCATTTGGTCAAAAAAGTTTGTCATTTTGAAA
AATATTTTGGACTTTGAATTAAAAACTTATTAACGTAAGAACTATTTCTCTCTTGGTTCTGAGAA
GAACTTCCAAACTTATC
Found at i:1427 original size:62 final size:62
Alignment explanation
Indices: 1347--1532 Score: 257
Period size: 62 Copynumber: 3.0 Consensus size: 62
1337 GTTAATTAAT
* *
1347 AACTTAGTTACGTAAGAATTATTTCTCTCTTGGTTCTGAGACGAACTTCCAAACTTATCAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTGAGACGAACTTCCAAACTTATCAAA
* * * * *
1409 AACTTATTTACGTGAGAATTGTTTCTCTCTCGGTTCTTAGACGAACTTCCAGACTTGTCAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTGAGACGAACTTCCAAACTTATCAAA
* * * *
1471 AACTTATTTACGTTAGAATTGTTTCTCTCTTGGTTCTTG-GACGAACATCCGAACTTTTCAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTC-TGAGACGAACTTCCAAACTTATCAAA
1533 CTTTTACGAT
Statistics
Matches: 109, Mismatches: 14, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
62 108 0.99
63 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.15, T:0.38
Consensus pattern (62 bp):
AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTGAGACGAACTTCCAAACTTATCAAA
Found at i:1771 original size:63 final size:60
Alignment explanation
Indices: 1600--1787 Score: 225
Period size: 63 Copynumber: 3.0 Consensus size: 60
1590 TTGAGTAATT
* * * *
1600 AAAAACTTATATACGTGAGAATTGGTTCTCT-TGGTTCTTGGACGAACTTTCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGCTTCTCTCTGGTTCTTGGACGAAC-TCCGAACTTGTC
* *
1660 AAAAACTTGTTTACGTGAGAATTGCTTCTCTCTTAGTTCTTGGACGAACTGCCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGCTTCTCTC-TGGTTCTTGGACGAACT-CCGAACTTGTC
* * * *
1722 AAAAACTTATTTTATGTAAGAATTGTTTCTCTCCTGGTTCTTGGACGAACATCTGAACTTGTC
1 AAAAACTTA-TTTACGTGAGAATTGCTTCTCT-CTGGTTCTTGGACGAAC-TCCGAACTTGTC
1785 AAA
1 AAA
1788 CTTTTACGAT
Statistics
Matches: 110, Mismatches: 12, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
60 28 0.25
61 1 0.01
62 32 0.29
63 47 0.43
64 2 0.02
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.37
Consensus pattern (60 bp):
AAAAACTTATTTACGTGAGAATTGCTTCTCTCTGGTTCTTGGACGAACTCCGAACTTGTC
Found at i:2383 original size:214 final size:216
Alignment explanation
Indices: 1722--2650 Score: 1139
Period size: 214 Copynumber: 4.3 Consensus size: 216
1712 CGAACTTGTC
* * * *
1722 AAAAACTTATTTTATGTAAGAATTGTTTCTCTCCTGGTTCTTGGACGAACATCTGAACTTGTCAA
1 AAAAACTTA-TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAA
* *
1787 ACTTTTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCATGACGATCCATTCCTTCGAGC
65 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGACGATCCATTCCTTCGAGC
* * * * *
1852 TATTTTCCAAACATTCC-TTCCTTGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGA
130 AATTTTCCAAACATTCCATGCATCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGA
1916 AAAATATTTTGGTCTTTGAATT
195 AAAATATTTTGGTCTTTGAATT
* * *
1938 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTAGACGAACTT-TAGAACATT-TTA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCT-GAAC-TTGTCA
* * * *
2001 AACTTTTACGTGTTGTTGTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTC
64 AACTTTTAC--G-AGTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGACGATCCATTCCTTC
* * * * *
2066 GGGCAGTTTTTCGAAA-TTTCCATGC-TCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCAT
126 GAGCA-ATTTTCCAAACATTCCATGCATCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCAT
** *
2129 TTTGTAAACAGGA-TTTGGTCTTTTAATT
190 TTTG-AAA-AATATTTTGGTCTTTGAATT
* * *
2157 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCTGAACTTTTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAA
* * * * *
2222 CTTTTACGAGTTCATTTATAACTTTGGTACCAT-AAAGTATTCAAGGCGATCCATTCCTTAGAG-
66 CTTTTACGAGTTCTTTTATAACTTCGGTTCC-TGAAAGTATTCAAGACGATCCATTCCTTCGAGC
* * * * * *
2285 AATTTTTCGAACATTCCATGC-TC-GTAAATCGCATCGTATGGTCTAAAAAGTTTGTCATTTCTT
130 AATTTTCCAAACATTCCATGCATCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTT-TG
* * *
2348 AAACATGTTTTGGTTTTTGAATT
194 AAAAATATTTTGGTCTTTGAATT
* *
2371 AAAAACTTATTTACGTTAGAATTGTTTCTCTCTTGG-TCATTGGACGAACATCTGAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTC-TTGGACGAACTTCTGAACTTGTCAA
* *
2435 ACTTTTACTA-TTACTTTTATAACTTCGGTTCCTGAAAGTATTCATGACGATCCATTCCTTCGAG
65 ACTTTTACGAGTT-CTTTTATAACTTCGGTTCCTGAAAGTATTCAAGACGATCCATTCCTTCGAG
* * *
2499 CTATTTTCCAAACATTCC-TTCATCGGGAAATCGCATCATTTGGT-AAAAATAGTTTGTCATTTT
129 CAATTTTCCAAACATTCCATGCATCGGGAAATCGCATCATTTGGTCTAAAA-AGTTTGTCATTTT
2562 GAAAAATATTTTGGTCTTTGAATT
193 GAAAAATATTTTGGTCTTTGAATT
* * * * *
2586 AAAAATTTATTTACGTGAGAACTGTTTCTCTCTTGGTTCTTGGAAGAACTTCCGAACTTATCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAA
2651 AACTTATTTA
Statistics
Matches: 606, Mismatches: 84, Indels: 47
0.82 0.11 0.06
Matches are distributed among these distances:
213 5 0.01
214 166 0.27
215 159 0.26
216 85 0.14
217 3 0.00
218 96 0.16
219 89 0.15
220 3 0.00
ACGTcount: A:0.27, C:0.17, G:0.15, T:0.41
Consensus pattern (216 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAA
CTTTTACGAGTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGACGATCCATTCCTTCGAGCA
ATTTTCCAAACATTCCATGCATCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGAA
AAATATTTTGGTCTTTGAATT
Found at i:2558 original size:21 final size:20
Alignment explanation
Indices: 2534--2574 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
2524 GGAAATCGCA
2534 TCATTTGGTAAAAATAGTTTG
1 TCATTTGG-AAAAATAGTTTG
* *
2555 TCATTTTGAAAAATATTTTG
1 TCATTTGGAAAAATAGTTTG
2575 GTCTTTGAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.34, C:0.05, G:0.15, T:0.46
Consensus pattern (20 bp):
TCATTTGGAAAAATAGTTTG
Found at i:2684 original size:62 final size:62
Alignment explanation
Indices: 2586--2712 Score: 182
Period size: 62 Copynumber: 2.0 Consensus size: 62
2576 TCTTTGAATT
* *
2586 AAAAATTTATTTACGTGAGAACTGTTTCTCTCTTGGTTCTTGGAAGAACTTCCGAACTTATC
1 AAAAACTTATTTACGTGAGAACTCTTTCTCTCTTGGTTCTTGGAAGAACTTCCGAACTTATC
* * * * * *
2648 AAAAACTTATTTACGTGAGAATTCTTTCTCTTTTGGTTTTTGGATGAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTGAGAACTCTTTCTCTCTTGGTTCTTGGAAGAACTTCCGAACTTATC
2710 AAA
1 AAA
2713 CTTTCACGAG
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
62 57 1.00
ACGTcount: A:0.28, C:0.16, G:0.16, T:0.41
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAACTCTTTCTCTCTTGGTTCTTGGAAGAACTTCCGAACTTATC
Found at i:2964 original size:62 final size:62
Alignment explanation
Indices: 2879--3051 Score: 251
Period size: 61 Copynumber: 2.8 Consensus size: 62
2869 CTTAGCTACA
* *
2879 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTATCAAAAACTTATTTACT
1 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTATCAAAAACTTATTTACG
* * * *
2941 TGAGAATTGTTTCTCTCTCGGTTCTTGGACGAACATCC-AGCCCTGTC-AAAACTTATTTACG
1 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGA-ACTTATCAAAAACTTATTTACG
* *
3002 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCTGAACTTTTCAAA
1 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTATCAAA
3052 CTTTTACGAT
Statistics
Matches: 97, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
61 54 0.56
62 43 0.44
ACGTcount: A:0.24, C:0.21, G:0.17, T:0.38
Consensus pattern (62 bp):
TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTATCAAAAACTTATTTACG
Found at i:2990 original size:278 final size:276
Alignment explanation
Indices: 2371--2977 Score: 769
Period size: 277 Copynumber: 2.2 Consensus size: 276
2361 TTTTTGAATT
2371 AAAAACTTATTTACGTT-AGAATTGTTTCTCTCTTGG-TCATTGGACGAACATCTGAACTTGTCA
1 AAAAACTTATTTAC-TTGAGAATTGTTTCTCTCTTGGTTC-TTGGACGAACATC-GAACTTGTCA
* * * * * *
2434 AACTTTTACTATTACTTTTATAACTTCGGTTCCTGAAAGTATTCATGACGATCCATTCCTTCGAG
63 AACTTTCACGATTACTTTTATAACTTAGGTTCCTGAAAGCATTCAAGACAATCCATTCCTTCGAG
* * * * * * *
2499 CTATTTTCCAAACATTCCTTCATCGGGAAATCGCATCATTTGGTAAAAATAGTTTGTCATTTTGA
128 CAAATTTCCAAACATTCCTGCATCGAGAAATCACACCATTTGGTAAAAATAGTTTATCATTTTGA
* ** *
2564 AAAATATTTTGGTCTTTGAATTAAAAATTTATTTACGTGAGAACTGTTTCTCTCTTGGTTCTTGG
193 AAAATATTTTGGTCTTTGAATTAAAAACTTAGCTACATGAGAACTGTTTCTCTCTTGGTTCTTGG
2629 AAGAACTTCCGAACTTATC
258 AAGAACTTCCGAACTTATC
* * * * * *
2648 AAAAACTTATTTACGTGAGAATTCTTTCTCTTTTGGTTTTTGGATGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACTTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-ATCGAACTTGTCAAA
* * *
2713 CTTTCACGAGTTA-TTTTATAACTTAGGTTCCTTAAAGCATTCAAGACAATCTATTCCTTTGAGC
65 CTTTCACGA-TTACTTTTATAACTTAGGTTCCTGAAAGCATTCAAGACAATCCATTCCTTCGAGC
* **
2777 AAATTTCCAAACATTCCATGC-TCGAGAAATCACACCATTTGGTCAAAATAGTTTATGTTTTTGT
129 AAATTTCCAAACATTCC-TGCATCGAGAAATCACACCATTTGGTAAAAATAGTTTATCATTTTG-
* * *
2841 AAACAA-GTTTTGGAT-TGTT-AATTAATAACTTAGCTACATGAGAATTGTTTCTCTCTTGGTTC
192 AAA-AATATTTTGG-TCT-TTGAATTAAAAACTTAGCTACATGAGAACTGTTTCTCTCTTGGTTC
*
2903 TTGGACGAACTTCCGAACTTATC
254 TTGGAAGAACTTCCGAACTTATC
*
2926 AAAAACTTATTTACTTGAGAATTGTTTCTCTCTCGGTTCTTGGACGAACATC
1 AAAAACTTATTTACTTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATC
2978 CAGCCCTGTC
Statistics
Matches: 281, Mismatches: 40, Indels: 18
0.83 0.12 0.05
Matches are distributed among these distances:
276 1 0.00
277 155 0.55
278 120 0.43
279 5 0.02
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (276 bp):
AAAAACTTATTTACTTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCGAACTTGTCAAAC
TTTCACGATTACTTTTATAACTTAGGTTCCTGAAAGCATTCAAGACAATCCATTCCTTCGAGCAA
ATTTCCAAACATTCCTGCATCGAGAAATCACACCATTTGGTAAAAATAGTTTATCATTTTGAAAA
ATATTTTGGTCTTTGAATTAAAAACTTAGCTACATGAGAACTGTTTCTCTCTTGGTTCTTGGAAG
AACTTCCGAACTTATC
Found at i:3303 original size:62 final size:62
Alignment explanation
Indices: 3202--3375 Score: 267
Period size: 62 Copynumber: 2.8 Consensus size: 62
3192 TCGCTGAATT
* *
3202 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
* * *
3264 AAAAACTTGTTTACGTGAGAATTGCTTCTCTCTTAGTTCTTGGACGAACTTCCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
* * *
3326 AAAAACTTATTTTATGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
1 AAAAACTTA-TTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGGACGAAC
3376 ATCTGAACTT
Statistics
Matches: 101, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
62 65 0.64
63 36 0.36
ACGTcount: A:0.26, C:0.18, G:0.17, T:0.39
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
Found at i:3542 original size:340 final size:339
Alignment explanation
Indices: 2586--3594 Score: 1287
Period size: 340 Copynumber: 3.0 Consensus size: 339
2576 TCTTTGAATT
* * * *
2586 AAAAATTTATTTACGTGAGAACTGTTTCTCTCTTGGTTCTTGGAAGAACTTCCGAACTTATCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * * *
2651 AACTTATTTACGTGAGAATTCTTTCTCTTTTGGTTTTTGGATGAAC-TTTCGAACTTGTCAAACT
66 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCT-GAACTTGTCAAACT
* * * * * * * *
2715 TTCACGAGTTATTTTATAACTTAGGTTCCTTAAAGCATTCAAGACAATCTATTCCTTTGAGCAAA
130 TTTACGATTTATTTTATAACTTCGGTTCCTGAAAGTATTCAAGACGATCCATTCCTTTGAGCAAT
* * ** * * *
2780 TTTCCAAACATTCCATGCTCGAGAAATCACACCATTTGGTCAAAATAGTTTATGTTTTTGTAAAC
195 TTTCCAAACATTCC-TGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAAC
**
2845 AAGTTTTGGAT-TGTT-AATTAATAACTTAGCTACATGAGAATTGTTTCTCTCTTGGTTCTTGGA
259 AAGTTTTGG-TCT-TTGAATTAATAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGA
*
2908 CGAACTTCCGAACTTATC
322 CGAACTTCCAAACTTATC
* * * * *
2926 AAAAACTTATTTACTTGAGAATTGTTTCTCTCTCGGTTCTTGGACGAACATCC-AGCCCTGTC-A
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGA-ACTTGTCAA
*
2989 AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCTGAACTTTTCAAACT
65 AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCTGAACTTGTCAAACT
* * *
3054 TTTACGATTTTTTTTATAACTTCGGTTCCCGAAAGTATTCAAGAGGATCCATTCCTTTGAGCAAT
130 TTTACGATTTATTTTATAACTTCGGTTCCTGAAAGTATTCAAGACGATCCATTCCTTTGAGCAAT
*** ** * *
3119 TTTTTGAACATTCCAACTCGGGAAATCGTATAATTTGGTCTAAATAGTTTGTCTTTCTGTAAACA
195 TTTCCAAACATTCCTGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACA
* ** * * *
3184 AGTTGTGGTCGCTGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGA
260 AGTTTTGGTCTTTGAATTAATAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
* *
3249 ACTTTCAAACTTGTC
325 ACTTCCAAACTTATC
* * *
3264 AAAAACTTGTTTACGTGAGAATTGCTTCTCTCTTAGTTCTTGGACGAACTTCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * *
3329 AACTTATTTTATGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCTGAACTTGTCGAACT
66 AACTTA-TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCTGAACTTGTCAAACT
* * * * *
3394 TTTATGATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCATGACGATCCATTCCTTCGAGCTAT
130 TTTACGATTTATTTTATAACTTCGGTTCCTGAAAGTATTCAAGACGATCCATTCCTTTGAGCAAT
3459 TTTCCAAACATTCCTTGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGT-TATTTTG-AAA
195 TTTCCAAACATTCC-TGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCT-TTTTGTAAA
* * * *
3522 -AATATTTTGGTCTTTGAATTAATAACTTATTTACATGAGAACTGTTTCTCTCTTTGTTCTTAGA
258 CAA-GTTTTGGTCTTTGAATTAATAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGA
3586 CGAACTTCC
322 CGAACTTCC
3595 GAACATTTTA
Statistics
Matches: 571, Mismatches: 88, Indels: 20
0.84 0.13 0.03
Matches are distributed among these distances:
337 2 0.00
338 157 0.27
339 134 0.23
340 239 0.42
341 39 0.07
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.40
Consensus pattern (339 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCTGAACTTGTCAAACTT
TTACGATTTATTTTATAACTTCGGTTCCTGAAAGTATTCAAGACGATCCATTCCTTTGAGCAATT
TTCCAAACATTCCTGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAA
GTTTTGGTCTTTGAATTAATAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA
CTTCCAAACTTATC
Found at i:4464 original size:216 final size:214
Alignment explanation
Indices: 3326--4464 Score: 1181
Period size: 216 Copynumber: 5.3 Consensus size: 214
3316 CGAACTTGTC
* * * **
3326 AAAAACTTATTT-TATGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCTGAACTTGTCG
1 AAAAACTTATTTACATG--AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTTA
* * * *
3390 AACTTTTATGAT-TTCTTTTATAACTTCGGTTCCTGAAAGTATTCATGACGATCCATTCCTTCGA
64 AACTTTTACG-TGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA
* * * * * *
3454 GCTATTTTCCAAACATTCCTTGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTTATTTTG
128 G-AATTTTTCAAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG
*
3519 -AAA-AATATTTTGGTCTTTGAATT
192 TAAACAA-GTTTTGG-CTTTGAATT
* * * *
3542 AATAACTTATTTACATGAGAACTGTTTCTCTCTTTGTTCTTAGACGAACTTCCGAACATT-TTAA
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAAC-TTGTTAA
** * *
3606 ACTTTTACAAGTTGTTTTAGAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCG-GA
65 ACTTTTACGTGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGA
* * *
3670 CAGTTTTTCGAAGATTTCCATGCTCGAGAAATCGCATCATTTGGTCTGAATAGTTTGTCATTTTG
130 -A-TTTTTCAAACA-TTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG
* * *
3735 TAAACAGGATTTGGTCTTTCAATT
192 TAAACAAGTTTTGG-CTTTGAATT
* * * * * * *
3759 AAAAACTTATTTACGTGAGAAATGTTTCTCTCTTGGTTCTTGGATGAACTTCTGAACATCTCAAA
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTTAAA
* * ***
3824 CTTTTATGAGTTCTTTTATAACTTCGGCGCCTTACAA-TATTCAAGACGATCCATTCCTTCGAGA
66 CTTTTACGTGTTCTTTTATAACTTCGATTCCTTA-AAGTATTCAAGACGATCCATTCCTTCGAGA
* * * **
3888 ATTTTTCGAACACTT-CATGCTCGTA-AAATCGCATCGTATGGTCTGAAA-AGTTTGTCATTTCA
130 ATTTTTCAAACA-TTCCATGCTCG-AGAAATCGCATCATTTGGTCT-AAATAGTTTGTCATTTTG
*
3950 TAAACATA-TTTTGGTTTTCGAATT
192 TAAACA-AGTTTTGGCTTT-GAATT
* * * * * * *
3974 AAAAACTTATTTACATCAGAACTGTTTCTCTCTTGGCTCTTGGACGAACATCCAAAATTGTCAAA
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTTAAA
* * * *
4039 CTTTTACGAT-TTCTTTCATAACTTCGATTCCTGAAAGTATTCAAGATGATCTATTCCTTCGAGC
66 CTTTTACG-TGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG-
* * * *
4103 AATTTTTCGAACATTCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCAGTTTGTA
129 AATTTTTCAAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
*
4168 AACAAGTTTTGGTGTTTGAATT
194 AACAAGTTTTGG-CTTTGAATT
* * * * * * *
4190 AAAGACTTATTTACGTGTGAATTTTTTCTCTCTCT-ATTCTTGGACGAACTTTCGAACTTGTTAG
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCT-TGGTTCTTGGACGAACTTCCGAACTTGTTAA
* * * * *
4254 ACTTTCACGTGTTCCTTAATAACTTAGATTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGA
65 ACTTTTACGTGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGA
** * * * * * *
4319 AAATTTCAAAACATTCCATTCTCGAGAAATCACACCATGTGGTCAAAATAGTTTGTCGTTTTGTA
130 ATTTTTC-AAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
4384 AACAAGTTTTGGACTGTT-AATT
194 AACAAGTTTTGG-CT-TTGAATT
* * *
4406 AATAACTTAGTTACATGAGAATTGTTTCTCTCGTGGTTCTTGGACGAACTTCCGAACTT
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTT
4465 ATCAATAACT
Statistics
Matches: 765, Mismatches: 130, Indels: 56
0.80 0.14 0.06
Matches are distributed among these distances:
214 7 0.01
215 268 0.35
216 353 0.46
217 132 0.17
218 5 0.01
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (214 bp):
AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTTAAA
CTTTTACGTGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGAA
TTTTTCAAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
CAAGTTTTGGCTTTGAATT
Found at i:4697 original size:275 final size:275
Alignment explanation
Indices: 4189--4792 Score: 666
Period size: 275 Copynumber: 2.2 Consensus size: 275
4179 GTGTTTGAAT
* * * *
4189 TAAAGACTTATTTACGTGTGAATTTTTTCTCTCTCTATTCTTGGACGAACTTTCGAACTTGTTAG
1 TAAA-ACTTATTTACGTGAGAATTGTTTCTCTCT-TGTTCTTGGACGAAC--TCGAACTTGTTAA
* *
4254 ACTTTCACGTGTTCCTTAATAACTTAGATTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGA
62 ACTTTCACGTGTTCCTTAATAACTTAGATTCCTGAAAGTATGCAAGACGATCCATTCCTTTGAGA
* * * * *
4319 AAATTTCAAAACATTCCATTCTCGAGAAATCACACCATGTGGTCAAAATAGTTTGTCGTTTTGTA
127 AAATTTCAAAACATTCCATGCTCGAGAAAACACACAATGTGGTCAAAATAATTTGTCCTTTTGTA
* * * *
4384 AACAAGTTTTGGACTGTTAATTAATAACTTAGTTACATGAGAATT-GTTTCTCTCGTGGTTCTTG
192 AACAAGTTTTGGACTGTGAATTAAAAACTTAGTTACATGAGAATTAG-TTCTCTCGTGGATCTCG
*
4448 GACGAACTTCCGAACTT-A-
256 GACGAACTTCCAAACTTGAC
*
4466 TCAATAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-CGTACTT-TTCAA
1 T-AA-AACTTATTTACGTGAGAATTGTTTCTCTCTT-GTTCTTGGACGAACTCGAACTTGTT-AA
* * * * *
4529 ACTTTTACGAT-TT-CTTCTATAACTTCGGTTCCTGAAAGTATGCAAGAGGATCCATTCCTTTGA
62 ACTTTCACG-TGTTCCTT-AATAACTTAGATTCCTGAAAGTATGCAAGACGATCCATTCCTTTGA
* * *** ** * * *
4592 GCAATTTTTTGAACATTCCATGCTCGAGAAAACGTATAATTTGGTCTAAATAATTTGTCCTTTTG
125 GAAAATTTCAAAACATTCCATGCTCGAGAAAACACACAATGTGGTCAAAATAATTTGTCCTTTTG
* * *
4657 TAAACAAGTTTTGGTC-GCTGAATTAAAAACTTATTTACATGAGAATTAGTTCTCTCTTGGATCT
190 TAAACAAGTTTTGGACTG-TGAATTAAAAACTTAGTTACATGAGAATTAGTTCTCTCGTGGATCT
*
4721 CGGACGAACTTTCAAACTTGAC
254 CGGACGAACTTCCAAACTTGAC
* * * * *
4743 TAAAACTTATTCAGGTAAGTATTGTTTCTCTCTCAGTTCTTGGACGAACT
1 TAAAACTTATTTACGTGAGAATTGTTTCTCTCT-TGTTCTTGGACGAACT
4793 TTCGAGCTTG
Statistics
Matches: 274, Mismatches: 41, Indels: 25
0.81 0.12 0.07
Matches are distributed among these distances:
274 6 0.02
275 217 0.79
276 5 0.02
277 3 0.01
278 42 0.15
279 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.38
Consensus pattern (275 bp):
TAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGTTCTTGGACGAACTCGAACTTGTTAAACTT
TCACGTGTTCCTTAATAACTTAGATTCCTGAAAGTATGCAAGACGATCCATTCCTTTGAGAAAAT
TTCAAAACATTCCATGCTCGAGAAAACACACAATGTGGTCAAAATAATTTGTCCTTTTGTAAACA
AGTTTTGGACTGTGAATTAAAAACTTAGTTACATGAGAATTAGTTCTCTCGTGGATCTCGGACGA
ACTTCCAAACTTGAC
Found at i:4848 original size:63 final size:62
Alignment explanation
Indices: 4706--4854 Score: 172
Period size: 62 Copynumber: 2.4 Consensus size: 62
4696 TGAGAATTAG
* * * *
4706 TTCTCTCTTGGATCTCGGACGAACTTTCAAACTTGACTAAAACTTATTCAGGTAAGTATTGT
1 TTCTCTCTTGGATCTTGGACGAACTTTCAAACTTGACAAAAACTTATTCAGGTAAGAACTGT
** * * * * * *
4768 TTCTCTCTCAGTTCTTGGACGAACTTTCGAGCTTGTCAAAAACTTATTTTATGTAAGAACTGT
1 TTCTCTCTTGGATCTTGGACGAACTTTCAAACTTGACAAAAACTTA-TTCAGGTAAGAACTGT
*
4831 TTCTCTCTTGGCTCTTGGACGAAC
1 TTCTCTCTTGGATCTTGGACGAAC
4855 ATCTGAACTT
Statistics
Matches: 71, Mismatches: 15, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
62 38 0.54
63 33 0.46
ACGTcount: A:0.24, C:0.21, G:0.17, T:0.38
Consensus pattern (62 bp):
TTCTCTCTTGGATCTTGGACGAACTTTCAAACTTGACAAAAACTTATTCAGGTAAGAACTGT
Found at i:4866 original size:63 final size:62
Alignment explanation
Indices: 4706--4870 Score: 179
Period size: 63 Copynumber: 2.6 Consensus size: 62
4696 TGAGAATTAG
* * * * * *
4706 TTCTCTCTTGGATCTCGGACGAACTTTCAAACTTGACTAAAACTTATTCAGGTAAGTATTGT
1 TTCTCTCTTGGATCTTGGACGAACTTTCGAACTTGTCAAAAACTTATTCAGGTAAGAACTGT
** * * * *
4768 TTCTCTCTCAGTTCTTGGACGAACTTTCGAGCTTGTCAAAAACTTATTTTATGTAAGAACTGT
1 TTCTCTCTTGGATCTTGGACGAACTTTCGAACTTGTCAAAAACTTA-TTCAGGTAAGAACTGT
* *
4831 TTCTCTCTTGGCTCTTGGACGAAC-ATCTGAACTTGTCAAA
1 TTCTCTCTTGGATCTTGGACGAACTTTC-GAACTTGTCAAA
4871 CTTTTACGAT
Statistics
Matches: 84, Mismatches: 17, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
62 40 0.48
63 44 0.52
ACGTcount: A:0.25, C:0.21, G:0.16, T:0.38
Consensus pattern (62 bp):
TTCTCTCTTGGATCTTGGACGAACTTTCGAACTTGTCAAAAACTTATTCAGGTAAGAACTGT
Found at i:5204 original size:216 final size:215
Alignment explanation
Indices: 4805--5302 Score: 606
Period size: 216 Copynumber: 2.3 Consensus size: 215
4795 CGAGCTTGTC
* * * * * * *
4805 AAAAACTTATTTTATGTAAGAACTGTTTCTCTCTTGGCTCTTGGACGAAC-ATCTGAACTTGTCA
1 AAAAACTTA-TTTACGTGAGAATTGTTTCTCTCTTCGTTCTTGGATGAACTTTC-GAACTTGTCA
* * * * * * *
4869 AACTTTTACGATTTCCTTCATAACTTCGGTTCCTGAAAGTATTCAAGATGATCTATTCCTTCGAG
64 AACTTTCACGAGTTCCTTCATAACTTAGATTCCTGAAAATATTCAAGACGATCCATTCCTTCGAG
* * * * * * * * *
4934 CAATTTTTCGAACATTCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCAGTTTGT
129 CAAATTTCCAAACATTCCACGCTCGAGAAATCACACAATCTGGTCAAAATAGTTTGTCAGTTTGT
4999 AAACAAGTTTTGG-TGTTTGAATT
194 AAACAAGTTTTGGATG-TT-AATT
* *
5022 AAAAACTTATTTACGTGAGAATTTTTTCTCTC-TCTGTTCTTGGATGAACTTTCGAACTTGTCAG
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTC-GTTCTTGGATGAACTTTCGAACTTGTCAA
* * *
5086 ACTTTCACGAGTTCCTTTATAACTTAGATTCCTTAAAATATTCAAGACGATCCATTCCTTTGAGC
65 ACTTTCACGAGTTCCTTCATAACTTAGATTCCTGAAAATATTCAAGACGATCCATTCCTTCGAGC
* * *
5151 AAATTTCCAAACATTTCACGCTCGAGAAATCACACCATCTGGTCAAAATAGTTTGTCATTTTGTA
130 AAATTTCCAAACATTCCACGCTCGAGAAATCACACAATCTGGTCAAAATAGTTTGTCAGTTTGTA
5216 AACAAGTTTTGGACTGTTAATT
195 AACAAGTTTTGGA-TGTTAATT
* * * *
5238 AATAACTTAGTTACGTGAGAATTGTTTCTCTCTTCGTTCTTGGATGAACTTCCGAACTTATCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTCGTTCTTGGATGAACTTTCGAACTTGTCAAA
5303 AACTTATTTA
Statistics
Matches: 239, Mismatches: 37, Indels: 11
0.83 0.13 0.04
Matches are distributed among these distances:
215 1 0.00
216 221 0.92
217 15 0.06
218 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.38
Consensus pattern (215 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTCGTTCTTGGATGAACTTTCGAACTTGTCAAA
CTTTCACGAGTTCCTTCATAACTTAGATTCCTGAAAATATTCAAGACGATCCATTCCTTCGAGCA
AATTTCCAAACATTCCACGCTCGAGAAATCACACAATCTGGTCAAAATAGTTTGTCAGTTTGTAA
ACAAGTTTTGGATGTTAATT
Found at i:5339 original size:62 final size:62
Alignment explanation
Indices: 5241--5420 Score: 297
Period size: 62 Copynumber: 2.9 Consensus size: 62
5231 GTTAATTAAT
* * * *
5241 AACTTAGTTACGTGAGAATTGTTTCTCTCTTCGTTCTTGGATGAACTTCCGAACTTATCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTATCAAA
* *
5303 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAATTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTATCAAA
*
5365 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTT
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTT
5421 TTTAAACTTT
Statistics
Matches: 110, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
62 110 1.00
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.39
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTATCAAA
Found at i:5556 original size:556 final size:557
Alignment explanation
Indices: 4471--5642 Score: 1545
Period size: 556 Copynumber: 2.1 Consensus size: 557
4461 ACTTATCAAT
* *
4471 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC---CGTACTTTTCAAACTT
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTT
* * * * * * *
4533 TTACGATTTCTTCTATAACTTCGGTTCCTGAAAGTATGCAAGAGGATCCATTCCTTTGAGCAATT
66 TCACGATTCCTTCTATAACTTAGATTCCTGAAAATATGCAAGACGATCCATTCCTTTGAGCAAAT
*** * ** * * * *
4598 TTTTGAACATTCCATGCTCGAGAAAACGTATAATTTGGTCTAAATAATTTGTCCTTTTGTAAACA
131 TTCCAAACATTCCACGCTCGAGAAAACACACAATCTGGTCAAAATAATTTGTCATTTTGTAAACA
* * *
4663 AGTTTTGGTCGCTGAATTAAAAACTTATTTACATGAGAATTAGTTCTCTCTTGGATCTCGGACGA
196 AGTTTTGGACGCTGAATTAAAAACTTAGTTACATGAGAATTAGTTCTCTCTTCGATCTCGGACGA
* * * * *
4728 ACTTTCAAACTTGACTAAAACTTATTCAGGTAAGTATTGTTTCTCTCTCAGTTCTTGGACGAACT
261 ACTTCCAAACTTGACAAAAACTTATTCACGTAAGAATTGTTTCTCTCTCAGTTCTTGGACGAAAT
* * * *
4793 TTCGAGCTTGTCAAAAACTTATTTTATGTAAGAACTGTTTCTCTCTTGGCTCTTGGACGAACATC
326 TCCAAACTTGTCAAAAACTTATTTTACGTAAGAACTGTTTCTCTCTTGGCTCTTGGACGAACATC
** * *
4858 TGAACTTGTCAAACTTTTACGATTTCCTTCATAACTTCGGTTCCTGAAAGTATTCAAGATGATCT
391 CAAACTTGTCAAACTTTTACGATTTCCTTCATAACTTCGGTTCCTGAAAGTATTCAAGAGGATCC
* * * *
4923 ATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTT
456 ATTCCTTAGAGAAATTTTTCGAACATTCCATGCTCGAGAAATCGCATAATTTGGTCTAAACAGTT
*
4988 TGTCAGTTTGTAAACAAGTTTTGGT-GTTTGAATTAAA
521 TGACAGTTTGTAAACAAGTTTTGGTCG-TTGAATTAAA
* * *
5025 AACTTATTTACGTGAGAATTTTTTCTCTCTCT-GTTCTTGGATGAACTTTCGAACTTGTCAGACT
1 AACTTATTTACGTGAGAATTGTTTCTCTCT-TGGTTCTTGGACGAACTTTCGAACTTGTCAAACT
* *
5089 TTCACGAGTTCCTT-TATAACTTAGATTCCTTAAAATATTCAAGACGATCCATTCCTTTGAGCAA
65 TTCACGA-TTCCTTCTATAACTTAGATTCCTGAAAATATGCAAGACGATCCATTCCTTTGAGCAA
* * * *
5153 ATTTCCAAACATTTCACGCTCGAGAAATCACACCATCTGGTCAAAATAGTTTGTCATTTTGTAAA
129 ATTTCCAAACATTCCACGCTCGAGAAAACACACAATCTGGTCAAAATAATTTGTCATTTTGTAAA
* * * * *
5218 CAAGTTTTGGACTG-TTAATTAATAACTTAGTTACGTGAGAATT-GTTTCTCTCTTCGTTCTTGG
194 CAAGTTTTGGAC-GCTGAATTAAAAACTTAGTTACATGAGAATTAG-TTCTCTCTTCGATCTCGG
* * * * **
5281 ATGAACTTCCGAACTT-ATCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC
257 ACGAACTTCCAAACTTGA-CAAAAACTTATTCACGTAAGAATTGTTTCTCTCTCAGTTCTTGGAC
* * *
5345 GAAATTCCAAACTTGTCAAAAACTTA-TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
321 GAAATTCCAAACTTGTCAAAAACTTATTTTACGTAAGAACTGTTTCTCTCTTGGCTCTTGGACGA
* * * * **
5409 ACATCCAAACTTTTTAAACTTTTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCCGGAG
386 ACATCCAAACTTGTCAAACTTTTACGATTTCCTTCATAACTTCGGTTCCTGAAAGTATTCAAGAG
*
5474 GATCCATTCCTTAGAGAAATTTTTTGAACATTCCATGCTCGAGAAATCGCATAATTTGGTCTAAA
451 GATCCATTCCTTAGAGAAATTTTTCGAACATTCCATGCTCGAGAAATCGCATAATTTGGTCTAAA
** *
5539 CAGTTTGACCTTTTGTAAACAGGTTTTGGTCGTTGAATTAAA
516 CAGTTTGACAGTTTGTAAACAAGTTTTGGTCGTTGAATTAAA
* *
5581 AACTTATTTACGTGAGAATTGGTTCTCTCTTGGATCTTGGACGAACTTTCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
5643 AACTTATTTA
Statistics
Matches: 530, Mismatches: 78, Indels: 18
0.85 0.12 0.03
Matches are distributed among these distances:
554 42 0.08
555 2 0.00
556 242 0.46
557 238 0.45
558 6 0.01
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.38
Consensus pattern (557 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTT
TCACGATTCCTTCTATAACTTAGATTCCTGAAAATATGCAAGACGATCCATTCCTTTGAGCAAAT
TTCCAAACATTCCACGCTCGAGAAAACACACAATCTGGTCAAAATAATTTGTCATTTTGTAAACA
AGTTTTGGACGCTGAATTAAAAACTTAGTTACATGAGAATTAGTTCTCTCTTCGATCTCGGACGA
ACTTCCAAACTTGACAAAAACTTATTCACGTAAGAATTGTTTCTCTCTCAGTTCTTGGACGAAAT
TCCAAACTTGTCAAAAACTTATTTTACGTAAGAACTGTTTCTCTCTTGGCTCTTGGACGAACATC
CAAACTTGTCAAACTTTTACGATTTCCTTCATAACTTCGGTTCCTGAAAGTATTCAAGAGGATCC
ATTCCTTAGAGAAATTTTTCGAACATTCCATGCTCGAGAAATCGCATAATTTGGTCTAAACAGTT
TGACAGTTTGTAAACAAGTTTTGGTCGTTGAATTAAA
Found at i:5644 original size:340 final size:338
Alignment explanation
Indices: 5022--5973 Score: 1201
Period size: 340 Copynumber: 2.8 Consensus size: 338
5012 TGTTTGAATT
* * * * *
5022 AAAAACTTATTTACGTGAGAATTTTTTCTCTCTCT-GTTCTTGGATGAACTTTCGAACTTGTCAG
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCT-TGGTTCTTGGACGAACATCCGAACTTGTCAA
* * * * * * * *
5086 ACTTTCACGAGTTCCTTTATAACTTAGATTCCTTAAAATATTCAAGACGATCCATTCCTTTGAGC
65 ACTTTTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGACGATCCATTCCTTAGAG-
* * * * * * *
5151 AAATTTCCAAACATTTCACGCTCGAGAAATCACACCATCTGGTCAAAATAGTTTGTCATTTTGTA
129 AAATTTTCAAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
* * *
5216 AACAAGTTTTGGACTGTT-AATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTCGTTCTTG
194 AACAAGTTTTGGTC-GTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTCGTTCTTG
* * * *
5280 GATGAACTTCCGAACTTATCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC
258 GACGAACTTTCGAACTTATCAAAAACTTATTTACGTGAGAATTGCTTCTCTCTTAGTTCTTGGAC
*
5345 GAAATTCCAAACTTGTC
323 GAAATT-CAAACTTGAC
* * *
5362 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTTTTAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
** *
5427 CTTTTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCCGGAGGATCCATTCCTTAGAGAA
66 CTTTTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGACGATCCATTCCTTAGAGAA
** * * * *
5492 ATTTTTTGAACATTCCATGCTCGAGAAATCGCATAATTTGGTCTAAACAGTTTGACCTTTTGTAA
131 A-TTTTCAAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
* * * *
5557 ACAGGTTTTGGTCGTTGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGATCTTGGA
195 ACAAGTTTTGGTCGTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTCGTTCTTGGA
* * *
5622 CGAACTTTCGAACTTGTCAAAAACTTATTTACGTTAGCATTGCTTCTCTCTTAGTTCTTGGACGA
260 CGAACTTTCGAACTTATCAAAAACTTATTTACGTGAGAATTGCTTCTCTCTTAGTTCTTGGACGA
* *
5687 ACTTCAAGCTTGAC
325 AATTCAAACTTGAC
* * *
5701 AAAAACTTATTTTATGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCTGAACTTGTCAA
1 AAAAACTTA-TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAA
* * * * *
5766 ACATTTTATGATTTCTTTTATAACTTCGGTTCTTGAAGGTATTCATGACGATCCATTCCTTCGAG
65 AC-TTTTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGACGATCCATTCCTTAGAG
* * * *
5831 TAATTTCCAAGCATTCCTTGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG-A
129 AAATTTTCAAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
* * * * * *
5895 AA-AATATTTTGGTCTTTGAATTAAAAACTTATTCACGTGAGAACTGTTTCTCTCTTTGTTCTTA
194 AACAA-GTTTTGGTCGTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTCGTTCTTG
5959 GACGAACTTTCGAAC
258 GACGAACTTTCGAAC
5974 ATTTTAAACT
Statistics
Matches: 525, Mismatches: 81, Indels: 13
0.85 0.13 0.02
Matches are distributed among these distances:
338 1 0.00
339 93 0.18
340 374 0.71
341 57 0.11
ACGTcount: A:0.27, C:0.18, G:0.15, T:0.39
Consensus pattern (338 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
CTTTTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGACGATCCATTCCTTAGAGAA
ATTTTCAAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
CAAGTTTTGGTCGTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTCGTTCTTGGAC
GAACTTTCGAACTTATCAAAAACTTATTTACGTGAGAATTGCTTCTCTCTTAGTTCTTGGACGAA
ATTCAAACTTGAC
Found at i:5681 original size:62 final size:61
Alignment explanation
Indices: 5578--5766 Score: 245
Period size: 62 Copynumber: 3.0 Consensus size: 61
5568 TCGTTGAATT
* * *
5578 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGATCTTGGACGAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTAAGAATTGCTTCTCTCTTGGTTCTTGGACGAAC-TTCGAACTTGTC
* * * *
5640 AAAAACTTATTTACGTTAGCATTGCTTCTCTCTTAGTTCTTGGACGAACTTC-AAGCTTGAC
1 AAAAACTTATTTACGTAAGAATTGCTTCTCTCTTGGTTCTTGGACGAACTTCGAA-CTTGTC
* * *
5701 AAAAACTTATTTTATGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCTGAACTTGTC
1 AAAAACTTA-TTTACGTAAGAATTGCTTCTCTCTTGGTTCTTGGACGAACTTC-GAACTTGTC
5764 AAA
1 AAA
5767 CATTTTATGA
Statistics
Matches: 110, Mismatches: 13, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
60 2 0.02
61 17 0.15
62 81 0.74
63 8 0.07
64 2 0.02
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.38
Consensus pattern (61 bp):
AAAAACTTATTTACGTAAGAATTGCTTCTCTCTTGGTTCTTGGACGAACTTCGAACTTGTC
Found at i:6066 original size:556 final size:557
Alignment explanation
Indices: 5362--6528 Score: 1669
Period size: 556 Copynumber: 2.1 Consensus size: 557
5352 CAAACTTGTC
* * * *
5362 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTTTTAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACATTTTAAA
* * ** *
5427 CTTTTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCCGGAGGATCCATTCCTTAGAGAA
66 CTTTTACGAGTTCTTTTATAACTTCGATTCCTGAAAGTATTCAAGACGATCCATTCCTTAGAGAA
* *
5492 ATTTTTTGAACATTCCATGCTCGAGAAATCGCATAATTTGGTCTAAACAGTTTGACCTTTTGTAA
131 ATTTTTCGAACATTCCATGCTCGAGAAATCGCATAATTTGGTCTAAACAGTTTGACATTTTGTAA
* * *
5557 ACAGGTTTTGGTCGTTGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGATCTTGGA
196 ACAGGATTTGGTCGTTCAATTAAAAACTTATTTACATGAGAATTGGTTCTCTCTTGGATCTTGGA
* * * *
5622 CGAACTTTCGAACTTGTCAAAAACTTATTTACGTTAGCATTGCTTCTCTCTTAGTTCTTGGACGA
261 CGAACTTTCGAACTTGTCAAAAACTTATTTACGTGAGCATTGCTTCTCTCTCAATTCCTGGACGA
*
5687 ACTT-CAAGCTTGACAAAAACTTATTTTATGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
326 ACTTCCAAGCTTGACAAAAACTTATTTTATGTAAGAATTGTTTCTCTCTTGATTCTTGGACGAAC
* * * * * *
5751 ATCTGAACTTGTCAAACATTTTATGATTTCTTTTATAACTTCGGTTCTTGAAGGTATTCATGACG
391 ATCTGAACTTGTCAAAC-TTTTATGATTTATTTCATAACTTCGATTCTCGAAAGTATTCAAGACG
* * *
5816 ATCCATTCCTTCGAGTAATT-TCCAAGCATTCCTTGCTC-GAGAAATCGCATCATTTGGTCTAAA
455 ATCCATTCCTTCGAGTAATTGTCCAACCATTCCATGCTCTG-GAAATCGCATAATTTGGTCTAAA
**
5879 TAGTTTGTCATTTTG-AAA-AATATTTTGGTCTTTGAATT
519 TAGTTTGTCATTTTGTAAACAA-ATTTTGGTCGCTGAATT
* * * *
5917 AAAAACTTATTCACGTGAGAACTGTTTCTCTCTTTGTTCTTAGACGAACTTTCGAACATTTTAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACATTTTAAA
* * * * *
5982 CTTTTACGAGTTGTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGGGCA
66 CTTTTACGAGTTCTTTTATAACTTCGATTCCTGAAAGTATTCAAGACGATCCATTCCTTAGAGAA
* * * * * * * *
6047 GTTTTTCGAAGATTTCCATGCTCGGGAAATTGCATCATTTGGTCTGAATAGTTTGTCATTTTGTA
131 ATTTTTCGAACA-TTCCATGCTCGAGAAATCGCATAATTTGGTCTAAACAGTTTGACATTTTGTA
*
6112 AACAGGATTTGGTCTTTCAATTAAAAACTTATTTACATGAGAATTGGTTCTCTCTTGGATCTTGG
195 AACAGGATTTGGTCGTTCAATTAAAAACTTATTTACATGAGAATTGGTTCTCTCTTGGATCTTGG
* * * *
6177 ACGAACTTTCGAACTTGTCAAAACCTTATTTATGTGAGTATTGTTTCTCTCTCAATTCCTGGACG
260 ACGAACTTTCGAACTTGTCAAAAACTTATTTACGTGAGCATTGCTTCTCTCTCAATTCCTGGACG
* * * *
6242 AACTTCCGAGCTTGTCAAAAACTTATTTTATGTAAGAGTTGTTTCTCTCTTTATTCTTGGACGAA
325 AACTTCCAAGCTTGACAAAAACTTATTTTATGTAAGAATTGTTTCTCTCTTGATTCTTGGACGAA
* *
6307 CATCTGAACTTGTCAAACTTTTATGATTTATTTCATAAGTTCGATTCTCGAAAGTATTCAAGAGG
390 CATCTGAACTTGTCAAACTTTTATGATTTATTTCATAACTTCGATTCTCGAAAGTATTCAAGACG
* *** *
6372 ATCCATTCCTTTGAGTAATTGTTTGACCATTCCATGCTCTGGGAATCGCATAATTTGGTCTAAAT
455 ATCCATTCCTTCGAGTAATTGTCCAACCATTCCATGCTCTGGAAATCGCATAATTTGGTCTAAAT
* *
6437 AGTTTGTCTTTTTGTAAACAAGTTTTGGTCGCTGAATT
520 AGTTTGTCATTTTGTAAACAAATTTTGGTCGCTGAATT
*
6475 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCG
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCG
6529 GACTTGTCAA
Statistics
Matches: 536, Mismatches: 70, Indels: 9
0.87 0.11 0.01
Matches are distributed among these distances:
555 121 0.23
556 226 0.42
557 120 0.22
558 67 0.12
559 2 0.00
ACGTcount: A:0.26, C:0.17, G:0.17, T:0.40
Consensus pattern (557 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACATTTTAAA
CTTTTACGAGTTCTTTTATAACTTCGATTCCTGAAAGTATTCAAGACGATCCATTCCTTAGAGAA
ATTTTTCGAACATTCCATGCTCGAGAAATCGCATAATTTGGTCTAAACAGTTTGACATTTTGTAA
ACAGGATTTGGTCGTTCAATTAAAAACTTATTTACATGAGAATTGGTTCTCTCTTGGATCTTGGA
CGAACTTTCGAACTTGTCAAAAACTTATTTACGTGAGCATTGCTTCTCTCTCAATTCCTGGACGA
ACTTCCAAGCTTGACAAAAACTTATTTTATGTAAGAATTGTTTCTCTCTTGATTCTTGGACGAAC
ATCTGAACTTGTCAAACTTTTATGATTTATTTCATAACTTCGATTCTCGAAAGTATTCAAGACGA
TCCATTCCTTCGAGTAATTGTCCAACCATTCCATGCTCTGGAAATCGCATAATTTGGTCTAAATA
GTTTGTCATTTTGTAAACAAATTTTGGTCGCTGAATT
Found at i:6104 original size:216 final size:216
Alignment explanation
Indices: 5701--6198 Score: 625
Period size: 217 Copynumber: 2.3 Consensus size: 216
5691 CAAGCTTGAC
* * *
5701 AAAAACTTATTTTATGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-ATCTGAACTTGTCA
1 AAAAACTTA-TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTC-GAACTTGTCA
* * * * *
5765 AACATTTTATGATTTCTTTTATAACTTCGGTTCTTGAAGGTATTCATGACGATCCATTCCTTCGA
64 AACATTTTACGAGTTCTTTTATAACTTCGATTCTTGAAAGTATTCAAGACGATCCATTCCTTCGA
*
5830 GTAATTTCCAAGCATTCCTTGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG-
129 GTAATTTCCAAGCATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
* *
5894 AAA-AATATTTTGGTCTTTGAATT
194 AAACAAGA-TTTGGTCTTTCAATT
* * * * *
5917 AAAAACTTATTCACGTGAGAACTGTTTCTCTCTTTGTTCTTAGACGAACTTTCGAACATT-TTAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAAC-TTGTCAA
*
5981 AC-TTTTACGAGTTGTTTTATAACTTCGATTCCTT-AAAGTATTCAAGACGATCCATTCCTTCGG
65 ACATTTTACGAGTTCTTTTATAACTTCGATT-CTTGAAAGTATTCAAGACGATCCATTCCTTC--
* * * * *
6044 GCAGT-TTTTCGAAG-ATTTCCATGCTCGGGAAATTGCATCATTTGGTCTGAATAGTTTGTCATT
127 G-AGTAATTTCCAAGCA-TTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATT
*
6107 TTGTAAACAGGATTTGGTCTTTCAATT
190 TTGTAAACAAGATTTGGTCTTTCAATT
* * *
6134 AAAAACTTATTTACATGAGAATTGGTTCTCTCTTGGATCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
6199 ACCTTATTTA
Statistics
Matches: 241, Mismatches: 31, Indels: 19
0.83 0.11 0.07
Matches are distributed among these distances:
214 49 0.20
215 47 0.20
216 69 0.29
217 74 0.31
218 2 0.01
ACGTcount: A:0.27, C:0.17, G:0.16, T:0.40
Consensus pattern (216 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
CATTTTACGAGTTCTTTTATAACTTCGATTCTTGAAAGTATTCAAGACGATCCATTCCTTCGAGT
AATTTCCAAGCATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
ACAAGATTTGGTCTTTCAATT
Found at i:6225 original size:62 final size:61
Alignment explanation
Indices: 6134--6323 Score: 204
Period size: 62 Copynumber: 3.0 Consensus size: 61
6124 TCTTTCAATT
** * *
6134 AAAAACTTATTTACATGAGAATTGGTTCTCTCTTGGA-TCTTGGACGAACTTTCGAACTTGTC
1 AAAAACTTATTTATGTGAG-ATTGTTTCTCTCTT-AATTCTTGGACGAACTTTCGAACTTGTC
* * * * *
6196 AAAACCTTATTTATGTGAGTATTGTTTCTCTCTCAATTCCTGGACGAACTTCCGAGCTTGTC
1 AAAAACTTATTTATGTGAG-ATTGTTTCTCTCTTAATTCTTGGACGAACTTTCGAACTTGTC
* * *
6258 AAAAACTTATTTTATGTAAGAGTTGTTTCTCTCTTTATTCTTGGACGAAC-ATCTGAACTTGTC
1 AAAAACTTA-TTTATGTGAGA-TTGTTTCTCTCTTAATTCTTGGACGAACTTTC-GAACTTGTC
6321 AAA
1 AAA
6324 CTTTTATGAT
Statistics
Matches: 106, Mismatches: 18, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
61 1 0.01
62 60 0.57
63 45 0.42
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.39
Consensus pattern (61 bp):
AAAAACTTATTTATGTGAGATTGTTTCTCTCTTAATTCTTGGACGAACTTTCGAACTTGTC
Found at i:6286 original size:897 final size:895
Alignment explanation
Indices: 4409--6877 Score: 3350
Period size: 897 Copynumber: 2.8 Consensus size: 895
4399 GTTAATTAAT
* * ** * * *
4409 AACTTAGTTACATGAGAATTGTTTCTCTCGT-GGTTCTTGGACGAACTTCCGAACTTATCAATAA
1 AACTTATTTACGTGAGAATTGTTTCTCTC-TCAATTCCTGGACGAACTTCCGAACTTGTCAAAAA
*
4473 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG-A-A-CCGTACTTTTCAAACTTTT
65 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTTTCAAACTTTT
* * *
4535 ACGATTTCTTCTATAACTTCGGTTCCTGAAAGTATGCAAGAGGATCCATTCCTTTGAGCAATTTT
130 ACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGAGGATCCATTCCTTTGAGAAATTTT
* * *
4600 TTGAACATTCCATGCTCGAGAAAACGTATAATTTGGTCTAAATAATTTGTCCTTTTGTAAACAAG
195 TTGAACATTCCATGCTCGAGAAATCGCATAATTTGGTCTAAATAGTTTGTCCTTTTGTAAACAAG
* * *
4665 TTTTGGTCGCTGAATTAAAAACTTATTTACATGAGAATTAGTTCTCTCTTGGATCTCGGACGAAC
260 TTTTGGTCGCTGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGATCTTGGACGAAC
* * * * * * *
4730 TTTCAAACTTGACTAAAACTTATTCAGGTAAGTATTGTTTCTCTCTCAGTTCTTGGACGAACTTT
325 TTTCGAACTTGTCAAAAACTTATTTACGTAAGTATTGCTTCTCTCTTAGTTCTTGGACGAAC-TT
* * *
4795 CGAGCTTGTCAAAAACTTATTTTATGTAAGAACTGTTTCTCTCTTGGCTCTTGGACGAACATCTG
389 CAAGCTTGTCAAAAACTTATTTTATGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCTG
* * * * *
4860 AACTTGTCAAACTTTTACGATTTCCTTCATAACTTCGGTTCCTGAAAGTATTCAAGATGATCTAT
454 AACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCATGACGATCCAT
* *
4925 TCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTG
519 TCCTTCGAG-AAATTTTCGAACATTCCATGCTCGAGAAATCGCATAATTTGGTCTAAATAGTTTG
* * *
4990 TCAGTTTGTAAACAAGTTTTGGTGTTTGAATTAAAAACTTATTTACGTGAGAATTTTTTCTCTCT
583 TCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCT
* * *
5055 CTGTTCTTGGATGAACTTTCGAACTTGTCAGACTTTCACGAGTTCCTTTATAACTTAGATTCCTT
648 CTGTTCTTAGACGAACTTTCGAACTTGTCAAACTTTCACGAGTTCCTTTATAACTTAGATTCCTT
*
5120 AAAATATTCAAGACGATCCATTCCTTTGAGCAAATTTCCAAACATTTCACGCTCGAGAAATCACA
713 AAAATATTCAAGACGATCCATTCCTTCGAGCAAATTTCCAAACATTTCACGCTCGAGAAATCACA
* *
5185 CCATCTGGTCAAAATAGTTTGTCATTTTGTAAACAAGTTTTGGACTGTTAATTAATAACTTAGTT
778 CCATCTGGTCAAAATAGTTTGTCATTTTGTAAACAAGATTTGGACTGTTAATTAAAAACTTAGTT
* * * *
5250 ACGTGAGAATTGTTTCTCTCTTCGTTCTTGGATGAACTTCCGAACTTATCAAA
843 ACATGAGAATTGGTTCTCTCTTCGATCTTGGACGAACTTCCGAACTTATCAAA
*** * * *
5303 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAATTCCAAACTTGTCAAAAAC
1 AACTTATTTACGTGAGAATTGTTTCTCTCTCAATTCCTGGACGAACTTCCGAACTTGTCAAAAAC
* *
5368 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTTTTAAACTTTTA
66 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTTTCAAACTTTTA
** *
5433 CGATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCCGGAGGATCCATTCCTTAGAGAAATTTTT
131 CGATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGAGGATCCATTCCTTTGAGAAATTTTT
* * *
5498 TGAACATTCCATGCTCGAGAAATCGCATAATTTGGTCTAAACAGTTTGACCTTTTGTAAACAGGT
196 TGAACATTCCATGCTCGAGAAATCGCATAATTTGGTCTAAATAGTTTGTCCTTTTGTAAACAAGT
*
5563 TTTGGTCGTTGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGATCTTGGACGAACT
261 TTTGGTCGCTGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGATCTTGGACGAACT
* *
5628 TTCGAACTTGTCAAAAACTTATTTACGTTAGCATTGCTTCTCTCTTAGTTCTTGGACGAACTTCA
326 TTCGAACTTGTCAAAAACTTATTTACGTAAGTATTGCTTCTCTCTTAGTTCTTGGACGAACTTCA
*
5693 AGCTTGACAAAAACTTATTTTATGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCTGAA
391 AGCTTGTCAAAAACTTATTTTATGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCTGAA
* * *
5758 CTTGTCAAACATTTTATGATTTCTTTTATAACTTCGGTTCTTGAAGGTATTCATGACGATCCATT
456 CTTGTCAAAC-TTTTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCATGACGATCCATT
* * * *
5823 CCTTCGAGTAA-TTTCCAAGCATTCCTTGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGT
520 CCTTCGAGAAATTTTCGAA-CATTCCATGCTCGAGAAATCGCATAATTTGGTCTAAATAGTTTGT
* * *
5887 CATTTTG-AAA-AATATTTTGGTCTTTGAATTAAAAACTTATTCACGTGAGAACTGTTTCTCTCT
584 CATTTTGTAAACAA-GTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCT
* * * ** *
5950 TTGTTCTTAGACGAACTTTCGAACATT-TTAAACTTTTACGAGTTGTTTTATAACTTCGATTCCT
648 CTGTTCTTAGACGAACTTTCGAAC-TTGTCAAACTTTCACGAGTTCCTTTATAACTTAGATTCCT
* * ** * * * * * **
6014 TAAAGTATTCAAGACGATCCATTCCTTCGGGCAGTTTTTCGAAGATTTCCATGCTCGGGAAATTG
712 TAAAATATTCAAGACGATCCATTCCTTCGAGCAAATTTCCAAACATTT-CACGCTCGAGAAATCA
* * ** * *
6079 CATCATTTGGTCTGAATAGTTTGTCATTTTGTAAACAGGATTTGGTCT-TTCAATTAAAAACTTA
776 CACCATCTGGTCAAAATAGTTTGTCATTTTGTAAACAAGATTTGGACTGTT-AATTAAAAACTTA
* * * *
6143 TTTACATGAGAATTGGTTCTCTCTTGGATCTTGGACGAACTTTCGAACTTGTCAAA
840 GTTACATGAGAATTGGTTCTCTCTTCGATCTTGGACGAACTTCCGAACTTATCAAA
* * * *
6199 ACCTTATTTATGTGAGTATTGTTTCTCTCTCAATTCCTGGACGAACTTCCGAGCTTGTCAAAAAC
1 AACTTATTTACGTGAGAATTGTTTCTCTCTCAATTCCTGGACGAACTTCCGAACTTGTCAAAAAC
* * * ** * *
6264 TTATTTTATGTAAGAGTTGTTTCTCTCTTTATTCTTGGACGAACATCTGAACTTGTCAAACTTTT
66 TTA-TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTTTCAAACTTTT
* * * * * * *
6329 ATGATTTATTTCATAAGTTCGATT-CTCGAAAGTATTCAAGAGGATCCATTCCTTTGAGTAATTG
130 ACGATTTCTTTTATAACTTCGGTTCCT-GAAAGTATTCAAGAGGATCCATTCCTTTGAGAAATTT
* * *
6393 TTTGACCATTCCATGCTCTG-GGAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACA
194 TTTGAACATTCCATGCTC-GAGAAATCGCATAATTTGGTCTAAATAGTTTGTCCTTTTGTAAACA
*
6457 AGTTTTGGTCGCTGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGA
258 AGTTTTGGTCGCTGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGATCTTGGACGA
* * * * *
6522 ACTTTCGGACTTGTCAAAAACGTATTTACGTGAGTATTGCTTCTCTCATAGTTCTTGGACGAAAT
323 ACTTTCGAACTTGTCAAAAACTTATTTACGTAAGTATTGCTTCTCTCTTAGTTCTTGGACGAACT
* * * *
6587 TCCAAACTTGTCAAAAACTTA-TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTTGACGAACATC
388 T-CAAGCTTGTCAAAAACTTATTTTATGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATC
* * *
6651 CGAACTTTTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATTC-TGGAGGATC
452 TGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAT-GACGATC
* * *
6715 CATTCCTTAGAGAAATTTTTTGAACATTCCATGCTC-AGGAAATCGCATAATTTGGTCTAAACAG
516 CATTCCTTCGAGAAA-TTTTCGAACATTCCATGCTCGA-GAAATCGCATAATTTGGTCTAAATAG
* ** *
6779 TTTGTCCTTTTGTAAACAAGTTTTGGTCACTGAATTAAAAACTTATTTACGTGAGAATTGGTTCT
579 TTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCT
* * * * *
6844 CT-T-GGATCTTGGACGAATTTTTGAACTTGTCAAA
644 CTCTCTGTTCTTAGACGAACTTTCGAACTTGTCAAA
6878 AACTTATTTA
Statistics
Matches: 1385, Mismatches: 169, Indels: 40
0.87 0.11 0.03
Matches are distributed among these distances:
893 1 0.00
894 99 0.07
895 152 0.11
896 380 0.27
897 683 0.49
898 68 0.05
899 2 0.00
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.39
Consensus pattern (895 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTCAATTCCTGGACGAACTTCCGAACTTGTCAAAAAC
TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTTTCAAACTTTTA
CGATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGAGGATCCATTCCTTTGAGAAATTTTT
TGAACATTCCATGCTCGAGAAATCGCATAATTTGGTCTAAATAGTTTGTCCTTTTGTAAACAAGT
TTTGGTCGCTGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGATCTTGGACGAACT
TTCGAACTTGTCAAAAACTTATTTACGTAAGTATTGCTTCTCTCTTAGTTCTTGGACGAACTTCA
AGCTTGTCAAAAACTTATTTTATGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCTGAA
CTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCATGACGATCCATTC
CTTCGAGAAATTTTCGAACATTCCATGCTCGAGAAATCGCATAATTTGGTCTAAATAGTTTGTCA
TTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTCTG
TTCTTAGACGAACTTTCGAACTTGTCAAACTTTCACGAGTTCCTTTATAACTTAGATTCCTTAAA
ATATTCAAGACGATCCATTCCTTCGAGCAAATTTCCAAACATTTCACGCTCGAGAAATCACACCA
TCTGGTCAAAATAGTTTGTCATTTTGTAAACAAGATTTGGACTGTTAATTAAAAACTTAGTTACA
TGAGAATTGGTTCTCTCTTCGATCTTGGACGAACTTCCGAACTTATCAAA
Found at i:6303 original size:63 final size:62
Alignment explanation
Indices: 6171--6323 Score: 200
Period size: 63 Copynumber: 2.5 Consensus size: 62
6161 CTCTCTTGGA
* * *
6171 TCTTGGACGAACTTTCGAACTTGTCAAAACCTTATTTATGTGAGTATTGTTTCTCTCTCAAT
1 TCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTATGTAAGTATTGTTTCTCTCTCAAT
* * **
6233 TCCTGGACGAACTTCCGAGCTTGTCAAAAACTTATTTTATGTAAG-AGTTGTTTCTCTCTTTAT
1 TCTTGGACGAACTTCCGAACTTGTCAAAAACTTA-TTTATGTAAGTA-TTGTTTCTCTCTCAAT
* *
6296 TCTTGGACGAACATCTGAACTTGTCAAA
1 TCTTGGACGAACTTCCGAACTTGTCAAA
6324 CTTTTATGAT
Statistics
Matches: 78, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
62 31 0.40
63 47 0.60
ACGTcount: A:0.25, C:0.20, G:0.16, T:0.39
Consensus pattern (62 bp):
TCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTATGTAAGTATTGTTTCTCTCTCAAT
Found at i:6576 original size:62 final size:62
Alignment explanation
Indices: 6475--6663 Score: 252
Period size: 62 Copynumber: 3.0 Consensus size: 62
6465 TCGCTGAATT
* * **
6475 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGGACTTGTC
1 AAAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
* * * * *
6537 AAAAACGTATTTACGTGAGTATTGCTTCTCTCATAGTTCTTGGACGAAATTCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
* * * * *
6599 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTTGACGAACATCCGAACTTTTC
1 AAAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
6661 AAA
1 AAA
6664 CTTTTACGAT
Statistics
Matches: 108, Mismatches: 19, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
62 108 1.00
ACGTcount: A:0.27, C:0.19, G:0.17, T:0.38
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
Found at i:6802 original size:340 final size:341
Alignment explanation
Indices: 5917--7265 Score: 1622
Period size: 340 Copynumber: 4.0 Consensus size: 341
5907 TCTTTGAATT
* * * * * * * *
5917 AAAAACTTA-TTCACGTGAGAACTGTTTCTCTCTTTGTTCTTAGACGAACTTTCGAACATT-TTA
1 AAAAACTTATTTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAAC-TTGTCA
* * * *
5980 AACTTTTACGAGTTGTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGGG
65 AACTTTTACGATTTCTTTTATAACTTCGATTCCTGAAAGTATTCAAGACGATCCATTCCTTCGAG
* * * * *
6045 CAGTTTTTCGAAGATTTCCATGCTCGGGAAATTGCATCATTTGGTCTGAATAGTTTGTCATTTTG
130 CAATTTTTCGAACA-TTCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCATTTTG
* * * * *
6110 TAAACAGGATTTGGTCTTTCAATTAAAAACTTATTTACATGAGAATTGGTTCTCTCTTGGATCTT
194 TAAACAAGTTTTGGTCTCTGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGATCTT
* * * * * *
6175 GGACGAACTTTCGAACTTGTCAAAACCTTATTTATGTGAGTATTGTTTCTCTCTCAATTCCTGGA
259 GGACGAACTTTCGAACTTGTCAAAAACTTATTTACGTGAGTATTGCTTCTCTCTTAGTTCTTGGA
*
6240 CGAACTTCCGAGCTTGTC
324 CGAACTTCCAAGCTTGTC
* * ** *
6258 AAAAACTTATTTTATGTAAGAGTTGTTTCTCTCTTTATTCTTGGACGAACATCTGAACTTGTCAA
1 AAAAACTTATTTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAA
* * * * * *
6323 ACTTTTATGATTTATTTCATAAGTTCGATT-CTCGAAAGTATTCAAGAGGATCCATTCCTTTGAG
66 ACTTTTACGATTTCTTTTATAACTTCGATTCCT-GAAAGTATTCAAGACGATCCATTCCTTCGAG
* * *
6387 TAATTGTTT-GACCATTCCATGCTCTGGG-AATCGCATAATTTGGTCTAAATAGTTTGTCTTTTT
130 CAATT-TTTCGAACATTCCATGCTC-GGGAAATCGCATAATTTGGTCTAAATAGTTTGTCATTTT
* *
6450 GTAAACAAGTTTTGGTCGCTGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCT
193 GTAAACAAGTTTTGGTCTCTGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGATCT
* * *
6515 TGGACGAACTTTCGGACTTGTCAAAAACGTATTTACGTGAGTATTGCTTCTCTCATAGTTCTTGG
258 TGGACGAACTTTCGAACTTGTCAAAAACTTATTTACGTGAGTATTGCTTCTCTCTTAGTTCTTGG
* *
6580 ACGAAATTCCAAACTTGTC
323 ACGAACTTCCAAGCTTGTC
* * *
6599 AAAAACTTA-TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTTGACGAACATCCGAACTTTTCAA
1 AAAAACTTATTTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAA
* ** * * *
6663 ACTTTTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCTGGAGGATCCATTCCTTAGAGA
66 ACTTTTACGATTTCTTTTATAACTTCGATTCCTGAAAGTATTCAAGACGATCCATTCCTTCGAGC
* * * *
6728 AATTTTTTGAACATTCCATGCTCAGGAAATCGCATAATTTGGTCTAAACAGTTTGTCCTTTTGTA
131 AATTTTTCGAACATTCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCATTTTGTA
*
6793 AACAAGTTTTGGTCACTGAATTAAAAACTTATTTACGTGAGAATTGG-T-TCTCTTGGATCTTGG
196 AACAAGTTTTGGTCTCTGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGATCTTGG
* * *
6856 ACGAATTTTTGAACTTGTCAAAAACTTATTTACGTGAGTATTGCTTCTCTCTTAGTTGTTGGACG
261 ACGAACTTTCGAACTTGTCAAAAACTTATTTACGTGAGTATTGCTTCTCTCTTAGTTCTTGGACG
6921 AACTT-CAAGCTTGTC
326 AACTTCCAAGCTTGTC
* * *
6936 AAAAACTTATTTTATGTAAGAATTGTTTCTCTCCTGGTTCTTGGACGAACATCTGAACTTGTCAA
1 AAAAACTTATTTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAA
* * * * * * * * **
7001 ACTTTTACGATTACTTTTCTAACTTCGGTTCTTGAAAGTTTTCATGACAAACCATTAATTCGAGC
66 ACTTTTACGATTTCTTTTATAACTTCGATTCCTGAAAGTATTCAAGACGATCCATTCCTTCGAGC
* * * * * * * *
7066 TACTTTCCAAACATTCCTTGCTTGGGAAATCGCTTCATTTGGTCTAAATAGTTTGTCATTTTG-A
131 AATTTTTCGAACATTCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCATTTTGTA
* * * * * * * *
7130 AA-AATATTTTGGCCTTTGAATTAACAACTTATTTAAGTGAGAACTGTTTCTCTCTTGGTTCTTG
196 AACAA-GTTTTGGTCTCTGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGATCTTG
* * * * * * * *
7194 GAAGAGCTTTCAAACTTATCAAAAACTTATTTTACGTGAGAATTGTTTCTCTTTTGGTTCTTGGA
260 GACGAACTTTCGAACTTGTCAAAAACTTA-TTTACGTGAGTATTGCTTCTCTCTTAGTTCTTGGA
7259 CGAACTT
324 CGAACTT
7266 TCAAAGTTGA
Statistics
Matches: 866, Mismatches: 129, Indels: 27
0.85 0.13 0.03
Matches are distributed among these distances:
336 2 0.00
337 55 0.06
338 230 0.27
339 42 0.05
340 237 0.27
341 195 0.23
342 102 0.12
343 3 0.00
ACGTcount: A:0.26, C:0.17, G:0.17, T:0.40
Consensus pattern (341 bp):
AAAAACTTATTTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAA
ACTTTTACGATTTCTTTTATAACTTCGATTCCTGAAAGTATTCAAGACGATCCATTCCTTCGAGC
AATTTTTCGAACATTCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCATTTTGTA
AACAAGTTTTGGTCTCTGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGATCTTGG
ACGAACTTTCGAACTTGTCAAAAACTTATTTACGTGAGTATTGCTTCTCTCTTAGTTCTTGGACG
AACTTCCAAGCTTGTC
Found at i:6966 original size:62 final size:61
Alignment explanation
Indices: 6815--6985 Score: 177
Period size: 62 Copynumber: 2.8 Consensus size: 61
6805 TCACTGAATT
* * * * * *
6815 AAAAACTTATTTACGTGAGAATTGGTTCTCT--TGGATCTTGGACGAATTTTTGAA-CTTGTC
1 AAAAACTTATTTACGTAAGAATTGCTTCTCTCCTAGTTCTTGGACGAA--CTTCAAGCTTGTC
* * * *
6875 AAAAACTTATTTACGTGAGTATTGCTTCTCTCTTAGTTGTTGGACGAACTTCAAGCTTGTC
1 AAAAACTTATTTACGTAAGAATTGCTTCTCTCCTAGTTCTTGGACGAACTTCAAGCTTGTC
* * *
6936 AAAAACTTATTTTATGTAAGAATTGTTTCTCTCCTGGTTCTTGGACGAAC
1 AAAAACTTA-TTTACGTAAGAATTGCTTCTCTCCTAGTTCTTGGACGAAC
6986 ATCTGAACTT
Statistics
Matches: 93, Mismatches: 14, Indels: 6
0.82 0.12 0.05
Matches are distributed among these distances:
60 33 0.35
61 15 0.16
62 45 0.48
ACGTcount: A:0.26, C:0.16, G:0.18, T:0.40
Consensus pattern (61 bp):
AAAAACTTATTTACGTAAGAATTGCTTCTCTCCTAGTTCTTGGACGAACTTCAAGCTTGTC
Found at i:7613 original size:62 final size:61
Alignment explanation
Indices: 7430--7615 Score: 255
Period size: 62 Copynumber: 3.0 Consensus size: 61
7420 GTTAATTAAT
* * * * *
7430 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTTCGAACTTATAAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TCCGAACTTGTCAAA
* * * *
7492 AACTTATTTACGTGAGAATTGTTTCTCTCTCGATTCTTGGACGAACTACCAAACATGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT-CCGAACTTGTCAAA
*
7554 AACTTATTTACGTGAGAATTGTTTCTTTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TCCGAACTTGTCAAA
7616 CTTTCACGAG
Statistics
Matches: 108, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
61 1 0.01
62 106 0.98
63 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.37
Consensus pattern (61 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTCCGAACTTGTCAAA
Found at i:7774 original size:341 final size:336
Alignment explanation
Indices: 7155--7922 Score: 1200
Period size: 341 Copynumber: 2.3 Consensus size: 336
7145 TTGAATTAAC
* * * * * *
7155 AACTTATTTAAGTGAGAACTGTTTCTCTCTTGGTTCTTGGAAGAGCTTTCAAACTTATCAAAAAC
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
* * * *
7220 TTATTTTACGTGAGAATTGTTTCTCTTTTGGTTCTTGGACGAACTTTCAAAGTTGACTTTCACTA
66 TTA-TTTACGTGAGAATTGTTTCTCTTTTGGTTCTTGGACGAACATCCAAACTTGACTTTCACGA
* *
7285 GTTCTTTGATAACTTAGGTTCCTTAAAGCATTCAAGACGATCCATTTCTTTGAGCAAATTTTCAA
130 GTTCTTTGATAACTTAGGTTCCTTAAAGCATTCAAGAAGATCCATTTCTTTGAGCAAATTTCCAA
7350 ACATTCCATGCTCGAGAAAACACACCATCTGGTCAAAATAGTTTGTCATTTTGTAAACAAGTTTT
195 ACATTCCATGCTCGAGAAAACACACCATCTGGTCAAAATAGTTTGTCATTTTGTAAACAAGTTTT
* *
7415 GGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTTC
260 GGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCCCTTGGTTCTTGGACAAACTTCC
7480 GAACTTATAAAA
325 GAACTTATAAAA
* * * *
7492 AACTTATTTACGTGAGAATTGTTTCTCTCTCGATTCTTGGACGAACTACCAAACATGTCAAAAAC
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
*
7557 TTATTTACGTGAGAATTGTTTCT-TTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTC
66 TTATTTACGTGAGAATTGTTTCTCTT-TTGGTTCTTGGACGAACATCCAAACTTG----ACTTTC
*
7621 ACGAGTTCTATT-ATAACTTAGGTTCCTTAAAGTATTCAAGAAGATCCA-TTCATTTGAGCAAAT
126 ACGAGTTCT-TTGATAACTTAGGTTCCTTAAAGCATTCAAGAAGATCCATTTC-TTTGAGCAAAT
*
7684 TTCCAAACATTTCCATGCTCGAGAAATCACACCATCTGGTCAAAATAGTTTGTCATTTTGTAAAC
189 TTCCAAACA-TTCCATGCTCGAGAAAACACACCATCTGGTCAAAATAGTTTGTCATTTTGTAAAC
* *
7749 AAGTTTTGGACTTTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCCCTTGGTTCTTGGACG
253 AAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCCCTTGGTTCTTGGACA
*
7814 AACTTCCGAACTTATCAAA
318 AACTTCCGAACTTATAAAA
* *
7833 AACTTATCTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAATTCCAAACTTGTCAAAAAC
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
7898 TTATTTACGTGAGAATTGTTTCTCT
66 TTATTTACGTGAGAATTGTTTCTCT
7923 CT
Statistics
Matches: 392, Mismatches: 30, Indels: 13
0.90 0.07 0.03
Matches are distributed among these distances:
335 2 0.01
336 44 0.11
337 58 0.15
339 3 0.01
340 67 0.17
341 217 0.55
342 1 0.00
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.38
Consensus pattern (336 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
TTATTTACGTGAGAATTGTTTCTCTTTTGGTTCTTGGACGAACATCCAAACTTGACTTTCACGAG
TTCTTTGATAACTTAGGTTCCTTAAAGCATTCAAGAAGATCCATTTCTTTGAGCAAATTTCCAAA
CATTCCATGCTCGAGAAAACACACCATCTGGTCAAAATAGTTTGTCATTTTGTAAACAAGTTTTG
GACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCCCTTGGTTCTTGGACAAACTTCCG
AACTTATAAAA
Found at i:7868 original size:62 final size:61
Alignment explanation
Indices: 7771--7924 Score: 245
Period size: 62 Copynumber: 2.5 Consensus size: 61
7761 TTTAATTAAT
* * *
7771 AACTTAGTTACGTGAGAATTGTTTCTCCCTTGGTTCTTGGACGAACTTCCGAACTTATCAAA
1 AACTTA-TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAATTCCAAACTTATCAAA
*
7833 AACTTATCTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAATTCCAAACTTGTCAAA
1 AACTTAT-TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAATTCCAAACTTATCAAA
7895 AACTTATTTACGTGAGAATTGTTTCTCTCT
1 AACTTA-TTACGTGAGAATTGTTTCTCTCT
Statistics
Matches: 86, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
61 1 0.01
62 84 0.98
63 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.38
Consensus pattern (61 bp):
AACTTATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAATTCCAAACTTATCAAA
Done.