Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008021.1 Kokia drynarioides strain JFW-HI SEQ_122675, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4724
ACGTcount: A:0.34, C:0.14, G:0.20, T:0.33


Found at i:502 original size:21 final size:21

Alignment explanation


    Indices: 472--511  Score: 62
    Period size: 21  Copynumber: 1.9  Consensus size: 21

        462 ACTGTGATTA

                         *       
        472 TGTGGCCGTTTTCGACAATTT
          1 TGTGGCCGTTTTCCACAATTT

                 *             
        493 TGTGGTCGTTTTCCACAAT
          1 TGTGGCCGTTTTCCACAAT

        512 GTGCTATGTG


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  21   17  1.00

ACGTcount: A:0.15, C:0.20, G:0.23, T:0.42


Consensus pattern (21 bp):   
TGTGGCCGTTTTCCACAATTT

Found at i:1576 original size:15 final size:17

Alignment explanation


    Indices: 1538--1583  Score: 60
    Period size: 17  Copynumber: 2.8  Consensus size: 17

       1528 TATTAACTTT

                             
       1538 AAAACTATAGAAATGTG
          1 AAAACTATAGAAATGTG

                        *    
       1555 AAAACTATAG-ATTGTG
          1 AAAACTATAGAAATGTG

                          
       1571 -AAACTATATGAAA
          1 AAAACTATA-GAAA

       1584 CTATAGTTAA


Statistics
Matches: 25,  Mismatches: 2, Indels: 4
        0.81            0.06        0.13

Matches are distributed among these distances:
  15    8  0.32
  16    6  0.24
  17   11  0.44

ACGTcount: A:0.52, C:0.07, G:0.15, T:0.26


Consensus pattern (17 bp):   
AAAACTATAGAAATGTG
Done.