Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01008026.1 Kokia drynarioides strain JFW-HI SEQ_122680, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2385
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.28
Found at i:633 original size:216 final size:214
Alignment explanation
Indices: 2--2385 Score: 2441
Period size: 216 Copynumber: 11.0 Consensus size: 214
1 A
* * * * *
2 TATTTAGATCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAATTTGCTCTAAGGAATGTA
1 TATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAA-ATGCTCAAAGGAATGGA
** * * * *** * * * * * *
67 TTTTGTTGAATCCTTTAGGGAACCAAAGTTAAAAAATAACTTGTAAAAGTTTGACCAGTTTGGAA
65 TCGTCTTGAATACTTTAAGGAAGTGAAGTTATAAAAGAAC-TCTAAAAGTTTGACAAGTTCGAAA
*
132 GTTCGTCCAAGAAC-AA-AGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAACGACCAAAA
129 GTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAA
* *
195 CTTGTTTACAGAATGACAATC
194 CTTGTTTACAAAATGACAAAC
* * * * * * * * *
216 TATTTTGACCAAATGATGTGATTTATTGAGCAAGGAATGTTTGGAAAACTACTCGAAGGAATGGA
1 TATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATG-TTCGAAAAATGCTCAAAGGAATGGA
* * * * *
281 TCGCCTTGGATACTCTAAGGAACG-GAAGTTATAAAAGAAGTCGT-AAAGTTTGACACGTTCGAA
65 TCGTCTTGAATACTTTAAGGAA-GTGAAGTTATAAAAGAACTC-TAAAAGTTTGACAAGTTCGAA
* * * * * *
344 AGTCCATCCAAGAAAAAAAAGAGAAACAATTCTCACGCAAATAAGTTTTTAATTCGAAGACCAAA
128 AGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAA
*
409 ACTTGTTTACGAAATGACAAAC
193 ACTTGTTTACAAAATGACAAAC
* * * *
431 TCTTTAGACCAAATGA-GGGAATTTCTCGAGCTTGGAATGTTCAGAAAAATGCTCAAAGGAAAGG
1 TATTTAGACCAAATGATGCG-ATTTCTCGAGCATGGAATGTTC-GAAAAATGCTCAAAGGAATGG
* * * * * **
495 GTCGTCATGAATACTTTAAGGAAGTTAAGTTATAAAAGATCTCCACAAAGTTTGACAAGTTCGGG
64 ATCGTCTTGAATACTTTAAGGAAGTGAAGTTATAAAAGAACTCTA-AAAGTTTGACAAGTTCGAA
* * * * *
560 AGTTCGTCCATGAACCAAGAGTGATACAATTCTCTCGTAAATAAGTTTTTAATTCAAAGACCAAA
128 AGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAA
625 ACTTGTTTACAAAATGACAAAC
193 ACTTGTTTACAAAATGACAAAC
* * * *
647 TATTTAGACCAAATTATGTGATTTCTCGAGCATGGAATGTTCGAGAAATTGCTCTAAGGAATGGA
1 TATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGA-AAAATGCTCAAAGGAATGGA
** * * ** * * * *
712 TTTTGTTGAATACTTTAGGGAACCGAAGTTAAAAAATAACTCGTAAAAGTTTGAGAAGTTTGAAA
65 TCGTCTTGAATACTTTAAGGAAGTGAAGTTATAAAAGAACTC-TAAAAGTTTGACAAGTTCGAAA
* * * * * * *
777 GTTCATCCAAGAAAAAAGAGAGAAACAATTCTTACGTAAATAAGATTTTAATTAAAACATCAAAA
129 GTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAA
*
842 CTTGTTTGCAAAATGACAAAC
194 CTTGTTTACAAAATGACAAAC
* * * * * * * *
863 AATTTAAACAAAATGATACGATTTCCCGAGCATGAAATGTTCGAAAATTTCCTCGAAA-GAATGG
1 TATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAA-ATGCTC-AAAGGAATGG
* ** * ** *
927 ATCGTCTTGAATACTTTGAGGATCTGAAGTTATCAAAGAACAAGTAAAAGTTTGACAAGCTCGAA
64 ATCGTCTTGAATACTTTAAGGAAGTGAAGTTATAAAAGAAC-TCTAAAAGTTTGACAAGTTCGAA
* *
992 AGTTCGTCCAAGAACAAAGAGA-AAACAATTCTCACGTAAATAAGTTTTTAATTTAACGACCAAA
128 AGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAA
*
1056 ACTTGTTTACAAAATGA-AAATT
193 ACTTGTTTACAAAATGACAAA-C
* * * * * * *
1078 TATTTTGACCAAATGATGCAATTTCTTGAGCAAGGAATGTTTGGAAAATTGCTCGAAGGAATGGA
1 TATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATG-TTCGAAAAATGCTCAAAGGAATGGA
** * * * * * * *
1143 TCACCTTGAATACTTTGAGGAACG-AAAGTTATAAAAGAAGTTGTAACAGTTTGACACGTTTGAA
65 TCGTCTTGAATACTTTAAGGAA-GTGAAGTTATAAAAGAA-CTCTAAAAGTTTGACAAGTTCGAA
* *
1207 AGTTCGTCCAAGAAGAAAGAGAGAAACAATTCTCACGCAAATAAG-TTTTAATTC-AAGACCAAA
128 AGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAA
* * *
1270 ACTTGTTTACGAAATAAAAAAC
193 ACTTGTTTACAAAATGACAAAC
* * * *
1292 TCTTTAGACCAAATGATGCAATTTCTCGAGCATGGAATGTTCAGAAAAATGCTTAAAGGAATGGG
1 TATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTC-GAAAAATGCTCAAAGGAATGGA
* * * * * * * **
1357 TCATCTTTAATACTTTAAGGAAGTTAAGTTCTAAAAGATCTCCTCAAAGTTGGACAAGTTCGGGA
65 TCGTCTTGAATACTTTAAGGAAGTGAAGTTATAAAAGAACT-CTAAAAGTTTGACAAGTTCGAAA
* * *
1422 GTTCGTCCATGAACAAAGA-ATGATACAATTCTCTCGTAAATAAGTTTTTAATTCAAAGACCAAA
129 GTTCGTCCAAGAACAAAGAGA-GAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAA
1486 ACTTGTTTACAAAATGACAAAC
193 ACTTGTTTACAAAATGACAAAC
* * *
1508 TATTTAGACCAAATGATGCGATTTC-CAGAGCATGGAATGTTCGAAAAATTTCTCTAAGGAATAG
1 TATTTAGACCAAATGATGCGATTTCTC-GAGCATGGAATGTTCGAAAAA-TGCTCAAAGGAATGG
* * * * * *
1572 ATCTTGTTGAATACTTTAAAGAACG-GAAGTTAAAAAAAAACTCGTAAAAGTTTGACAAGTTCAA
64 ATCGTCTTGAATACTTTAAGGAA-GTGAAGTTATAAAAGAACTC-TAAAAGTTTGACAAGTTCGA
* * *
1636 AAGTTCATACAA-AGACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTTAAAGACCA
127 AAGTTCGTCCAAGA-ACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
*
1700 AAACTTGTTTGCAAAATGACAAAC
191 AAACTTGTTTACAAAATGACAAAC
* * * * * *
1724 AATTTAGGA-CAAATGATGCTACTTGC-CAAGCATGGAATATTCGAAAAATTGCTCGAAGGAATG
1 TATTTA-GACCAAATGATGCGA-TTTCTCGAGCATGGAATGTTCGAAAAA-TGCTCAAAGGAATG
* *
1787 GATCGTCTTGAATACTTTAAGG-ATTCGAAGTTATAAAAGAACTTGTAAAAGTTTGACAAGTTCG
63 GATCGTCTTGAATACTTTAAGGAAGT-GAAGTTATAAAAGAAC-TCTAAAAGTTTGACAAGTTCG
* * * *
1851 AAAGTTTGTCCAAGAATCCAAGAACAAATAGAGAAACAATTCTCACATAAATATGTTTTTATTTC
126 AAAG--T-T-C--G--TCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
*
1916 AAAGACCAAAACTTGTATACAAAATGACAAAC
183 AAAGACCAAAACTTGTTTACAAAATGACAAAC
* * * * *
1948 TATTTAGACCAAATGATGCGATTTCCCAAGGATGGAATGATCGGAAAATTGCTCAAAGGAATGGA
1 TATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTC-GAAAAATGCTCAAAGGAATGGA
* * * * * ** * *
2013 TCTTGTCGAATACCTT-AGGAAACTGAAGTTA-AATATTAACTCGTAAAAGTTTGACAAGTTTGG
65 TCGTCTTGAATACTTTAAGG-AAGTGAAGTTATAA-AAGAACTC-TAAAAGTTTGACAAGTTCGA
* * * *
2076 AAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACATAAATAATTTTTTAATTTAACGACCAA
127 AAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
* *
2141 AACTTGTTTGCAAAAGGACAAAC
192 AACTTGTTTACAAAATGACAAAC
* ** * * * * *
2164 TATTTAGACCAAATGATGCGATTTGTCGAGCGCGAAATATTTGAAAAATTGCTGAAATGAATGGA
1 TATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAA-TGCTCAAAGGAATGGA
**** *
2229 TCGTCTTGAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAA
65 TCGTCTTGAATACTTTAAGGAAGTGAAGTTATAAAAGAACT-CTAAAAGTTTGACAAGTTCGAAA
* * * *
2294 GTTCGCCCAAGAACAAAGAGAGGAACAATACTCACGTAAATAAGTTTTTAATTCAAAGACCAAAG
129 GTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAA
2359 CTTGTTTACAAAATGACAAAC
194 CTTGTTTACAAAATGACAAAC
2380 TATTTA
1 TATTTA
Statistics
Matches: 1784, Mismatches: 326, Indels: 118
0.80 0.15 0.05
Matches are distributed among these distances:
213 33 0.02
214 243 0.14
215 352 0.20
216 952 0.53
217 19 0.01
218 2 0.00
219 1 0.00
220 2 0.00
221 1 0.00
222 1 0.00
223 11 0.01
224 159 0.09
225 8 0.00
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.28
Consensus pattern (214 bp):
TATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATGCTCAAAGGAATGGAT
CGTCTTGAATACTTTAAGGAAGTGAAGTTATAAAAGAACTCTAAAAGTTTGACAAGTTCGAAAGT
TCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACT
TGTTTACAAAATGACAAAC
Found at i:1677 original size:861 final size:857
Alignment explanation
Indices: 3--2385 Score: 3121
Period size: 861 Copynumber: 2.8 Consensus size: 857
1 AT
* * *
3 ATTTAGATCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAATTTGCTCTAAGGAATGTAT
1 ATTTAGAACAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAATTTGCTCGAAGGAATGGAT
** * * * ** * * * * *
68 TTTGTTGAATCCTTTAGGGAACCAAAGTTAAAAAATAACTTGTAAAAGTTTGACCAGTTTGGAAG
66 CGTCTTGAATACTTTA-GGATCTGAAGTTATAAAAGAACTTGTAAAAGTTTGACAAGTTCGAAAG
*
133 TTCGTCCAAGAACAAAGAG-AAACAATTCTCACGTAAATAAGTTTTTAATTCAACGACCAAAACT
130 TTCGTCCAAGAACAAAGAGAAAACAATTCTCACGTAAATAAGTTTTTAATTTAACGACCAAAACT
* * * *
197 TGTTTACAGAATGACAATCTATTTTGACCAAATGATGTGATTTATTGAGCAAGGAATGTTTGGAA
195 TGTTTACAAAATGAAAATCTATTTTGACCAAATGATGCGATTTCTTGAGCAAGGAATGTTTGGAA
* * * * *
262 AACTACTCGAAGGAATGGATCGCCTTGGATACTCTAAGGAACGGAAGTTATAAAAGAAGTCGTAA
260 AATTGCTCGAAGGAATGGATCACCTTGAATACT-TTAGGAAC-GAAGTTATAAAAGAAGTCGTAA
* * * *
327 AGTTTGACACGTTCGAAAGTCCATCCAAGAAAAAAAAGAGAAACAATTCTCACGCAAATAAGTTT
323 AGTTTGACACGTTTGAAAGTTCGTCCAAGAAAAAAGAGAGAAACAATTCTCACGCAAATAAG-TT
* *
392 TTAATTCGAAGACCAAAACTTGTTTACGAAATGACAAACTCTTTAGACCAAATGAGGGAATTTCT
387 TTAATTC-AAGACCAAAACTTGTTTACGAAATGACAAACTCTTTAGACCAAATGATGCAATTTCT
* * *
457 CGAGCTTGGAATGTTCAGAAAAATGCTCAAAGGAAAGGGTCGTCATGAATACTTTAAGGAAGTTA
451 CGAGCATGGAATGTTCAGAAAAATGCTCAAAGGAATGGGTCGTCTTGAATACTTTAAGGAAGTTA
* * *
522 AGTTATAAAAGATCTCCACAAAGTTTGACAAGTTCGGGAGTTCGTCCATGAACCAAGAGTGATAC
516 AGTTATAAAAGATCTCCTCAAAGTTTGACAAGTTCGGGAGTTCGTCCATGAACAAAGAATGATAC
587 AATTCTCTCGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTT
581 AATTCTCTCGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTT
* * * * *
652 AGACCAAATTATGTGATTTCTCGAGCATGGAATGTTCGAGAAATTGCTCTAAGGAATGGATTTTG
646 AGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGCTCTAAGGAATAGATCTTG
** * * **
717 TTGAATACTTTAGGGAACCGAAGTTAAAAAATAACTCGTAAAAGTTTGAGAAGTTTGAAAGTTCA
711 TTGAATACTTTAAAGAACCGAAGTTAAAAAAAAACTCGTAAAAGTTTGACAAGTTCAAAAGTTCA
* * *
782 TCCAAGAAAAAAGAGAGAAACAATTCTTACGTAAATAAGATTTTAATTAAAACATCAAAACTTGT
776 TCAAAGAAAAAAGAGAGAAACAATTCTCACGTAAATAAGATTTTAATTAAAACACCAAAACTTGT
847 TTGCAAAATGACAAACA
841 TTGCAAAATGACAAACA
* * * *
864 ATTTA-AACAAAATGATACGATTTCCCGAGCATGAAATGTTCGAAAATTTCCTCGAAAGAATGGA
1 ATTTAGAAC-AAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAATTTGCTCGAAGGAATGGA
* ** *
928 TCGTCTTGAATACTTTGAGGATCTGAAGTTATCAAAGAACAAGTAAAAGTTTGACAAGCTCGAAA
65 TCGTCTTGAATACTTT-AGGATCTGAAGTTATAAAAGAACTTGTAAAAGTTTGACAAGTTCGAAA
993 GTTCGTCCAAGAACAAAGAGAAAACAATTCTCACGTAAATAAGTTTTTAATTTAACGACCAAAAC
129 GTTCGTCCAAGAACAAAGAGAAAACAATTCTCACGTAAATAAGTTTTTAATTTAACGACCAAAAC
* *
1058 TTGTTTACAAAATGAAAATTTATTTTGACCAAATGATGCAATTTCTTGAGCAAGGAATGTTTGGA
194 TTGTTTACAAAATGAAAATCTATTTTGACCAAATGATGCGATTTCTTGAGCAAGGAATGTTTGGA
*
1123 AAATTGCTCGAAGGAATGGATCACCTTGAATACTTTGAGGAACGAAAGTTATAAAAGAAGTTGTA
259 AAATTGCTCGAAGGAATGGATCACCTTGAATACTTT-AGGAACG-AAGTTATAAAAGAAGTCGTA
*
1188 ACAGTTTGACACGTTTGAAAGTTCGTCCAAGAAGAAAGAGAGAAACAATTCTCACGCAAATAAGT
322 A-AGTTTGACACGTTTGAAAGTTCGTCCAAGAAAAAAGAGAGAAACAATTCTCACGCAAATAAGT
* *
1253 TTTAATTCAAGACCAAAACTTGTTTACGAAATAAAAAACTCTTTAGACCAAATGATGCAATTTCT
386 TTTAATTCAAGACCAAAACTTGTTTACGAAATGACAAACTCTTTAGACCAAATGATGCAATTTCT
* * *
1318 CGAGCATGGAATGTTCAGAAAAATGCTTAAAGGAATGGGTCATCTTTAATACTTTAAGGAAGTTA
451 CGAGCATGGAATGTTCAGAAAAATGCTCAAAGGAATGGGTCGTCTTGAATACTTTAAGGAAGTTA
* *
1383 AGTTCTAAAAGATCTCCTCAAAGTTGGACAAGTTCGGGAGTTCGTCCATGAACAAAGAATGATAC
516 AGTTATAAAAGATCTCCTCAAAGTTTGACAAGTTCGGGAGTTCGTCCATGAACAAAGAATGATAC
1448 AATTCTCTCGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTT
581 AATTCTCTCGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTT
*
1513 AGACCAAATGATGCGATTTC-CAGAGCATGGAATGTTCGAAAAATTTCTCTAAGGAATAGATCTT
646 AGACCAAATGATGCGATTTCTC-GAGCATGGAATGTTCGAAAAATTGCTCTAAGGAATAGATCTT
*
1577 GTTGAATACTTTAAAGAACGGAAGTTAAAAAAAAACTCGTAAAAGTTTGACAAGTTCAAAAGTTC
710 GTTGAATACTTTAAAGAACCGAAGTTAAAAAAAAACTCGTAAAAGTTTGACAAGTTCAAAAGTTC
* * * *
1642 ATACAAAG-ACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTTAAAGACCAAAACTT
775 AT-CAAAGAAAAAAGAGAGAAACAATTCTCACGTAAATAAGATTTTAATTAAAACACCAAAACTT
1706 GTTTGCAAAATGACAAACA
839 GTTTGCAAAATGACAAACA
* * * * * * *
1725 ATTTAGGACAAATGATGCTACTTGCCAAGCATGGAATATTCGAAAAATTGCTCGAAGGAATGGAT
1 ATTTAGAACAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAATTTGCTCGAAGGAATGGAT
1790 CGTCTTGAATACTTTAAGGAT-TCGAAGTTATAAAAGAACTTGTAAAAGTTTGACAAGTTCGAAA
66 CGTCTTGAATACTTT-AGGATCT-GAAGTTATAAAAGAACTTGTAAAAGTTTGACAAGTTCGAAA
* * *
1854 GTTTGTCCAAGAATCCAAGAACAAATAGAGAAACAATTCTCACATAAATATGTTTTT-ATTTCAA
129 G--T-T-C--G--TCCAAGAACAAAGAGA-AAACAATTCTCACGTAAATAAGTTTTTAATTT-AA
* * * *** * *
1918 AGACCAAAACTTGTATACAAAATGACAAA-CTATTTAGACCAAATGATGCGATTTCCCAAGGATG
184 CGACCAAAACTTGTTTACAAAATGA-AAATCTATTTTGACCAAATGATGCGATTTCTTGAGCAAG
* * * *** * *
1982 GAATGATCGGAAAATTGCTCAAAGGAATGGATCTTGTCGAATACCTTAGGAAACTGAAGTTA-AA
248 GAATGTTTGGAAAATTGCTCGAAGGAATGGATCACCTTGAATACTTTAGG-AAC-GAAGTTATAA
** * * * *
2046 TATTAACTCGTAAAAGTTTGACAAGTTTGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTC
311 -AAGAAGTCGT-AAAGTTTGACACGTTTGAAAGTTCGTCCAAGAAAAAAGAGAGAAACAATTCTC
** * * * * * *
2111 ACATAAATAATTTTTTAATTTAACGACCAAAACTTGTTTGCAAAAGGACAAACTATTTAGACCAA
374 ACGCAAATAA-GTTTTAATTCAA-GACCAAAACTTGTTTACGAAATGACAAACTCTTTAGACCAA
* * ** * * * * * *
2176 ATGATGCGATTTGTCGAGCGCGAAATATT-TGAAAAATTGCTGAAATGAATGGATCGTCTTGAAT
437 ATGATGCAATTTCTCGAGCATGGAATGTTCAGAAAAA-TGCTCAAAGGAATGGGTCGTCTTGAAT
**** * ** * ** * *
2240 ACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGCCCAAG
501 ACTTTAAGGAAGTTAAGTTATAAAAGATCTCCTCAAAGTTTGACAAGTTCGGGAGTTCGTCCATG
* * * *
2305 AACAAAGAGAGGA-ACAATACTCACGTAAATAAGTTTTTAATTCAAAGACCAAAGCTTGTTTACA
566 AACAAAGA-ATGATACAATTCTCTCGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACA
2369 AAATGACAAACTATTTA
630 AAATGACAAACTATTTA
Statistics
Matches: 1333, Mismatches: 160, Indels: 47
0.87 0.10 0.03
Matches are distributed among these distances:
860 4 0.00
861 654 0.49
862 174 0.13
863 58 0.04
864 1 0.00
865 1 0.00
867 1 0.00
869 24 0.02
870 187 0.14
871 22 0.02
872 204 0.15
873 3 0.00
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.28
Consensus pattern (857 bp):
ATTTAGAACAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAATTTGCTCGAAGGAATGGAT
CGTCTTGAATACTTTAGGATCTGAAGTTATAAAAGAACTTGTAAAAGTTTGACAAGTTCGAAAGT
TCGTCCAAGAACAAAGAGAAAACAATTCTCACGTAAATAAGTTTTTAATTTAACGACCAAAACTT
GTTTACAAAATGAAAATCTATTTTGACCAAATGATGCGATTTCTTGAGCAAGGAATGTTTGGAAA
ATTGCTCGAAGGAATGGATCACCTTGAATACTTTAGGAACGAAGTTATAAAAGAAGTCGTAAAGT
TTGACACGTTTGAAAGTTCGTCCAAGAAAAAAGAGAGAAACAATTCTCACGCAAATAAGTTTTAA
TTCAAGACCAAAACTTGTTTACGAAATGACAAACTCTTTAGACCAAATGATGCAATTTCTCGAGC
ATGGAATGTTCAGAAAAATGCTCAAAGGAATGGGTCGTCTTGAATACTTTAAGGAAGTTAAGTTA
TAAAAGATCTCCTCAAAGTTTGACAAGTTCGGGAGTTCGTCCATGAACAAAGAATGATACAATTC
TCTCGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACC
AAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGCTCTAAGGAATAGATCTTGTTGAA
TACTTTAAAGAACCGAAGTTAAAAAAAAACTCGTAAAAGTTTGACAAGTTCAAAAGTTCATCAAA
GAAAAAAGAGAGAAACAATTCTCACGTAAATAAGATTTTAATTAAAACACCAAAACTTGTTTGCA
AAATGACAAACA
Done.