Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01008028.1 Kokia drynarioides strain JFW-HI SEQ_122682, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  182405

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8442--8479
2
19.0
2
100
0
76
50
0
0
50
1.00
13206--13258
21
2.5
21
84
6
63
60
7
1
30
1.35
16881--16937
12
4.4
13
79
12
55
59
0
22
17
1.37
36827--37090
132
2.0
132
90
1
422
29
24
23
22
1.99
37194--37235
12
3.4
12
86
3
57
59
0
0
40
0.97
44167--44573
200
2.0
200
99
0
796
32
13
16
37
1.88
51398--51437
12
3.3
12
85
0
53
2
57
0
40
1.12
51401--51435
18
1.9
18
94
0
61
2
54
0
42
1.15
56948--56977
2
15.0
2
100
0
60
50
0
0
50
1.00
57759--57815
6
9.5
6
94
0
87
17
5
33
43
1.71
57759--57815
18
3.2
18
94
0
96
17
5
33
43
1.71
57946--58036
44
2.1
44
93
0
155
27
7
25
39
1.83
57953--58053
44
2.3
44
85
0
148
29
8
24
36
1.86
62535--62582
13
3.7
13
77
0
60
33
8
20
37
1.83
75667--75706
20
2.0
20
85
0
53
30
7
20
42
1.79
80218--80255
19
2.0
19
100
0
76
10
26
5
57
1.53
81166--81217
23
2.3
22
86
3
68
34
5
1
57
1.33
81148--81233
30
3.0
28
80
16
95
36
3
1
59
1.22
82109--82172
31
2.1
29
82
5
74
31
3
4
60
1.32
82518--82561
23
1.9
23
95
0
79
31
13
0
54
1.39
87826--87880
22
2.4
23
77
17
60
60
7
1
30
1.35
89231--89303
30
2.5
30
90
2
112
24
5
15
54
1.61
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94885--94923
20
2.0
20
94
0
69
30
10
2
56
1.46
112850--112881
16
2.0
16
93
0
55
21
6
6
65
1.38
114297--114325
14
2.0
15
93
6
51
44
6
0
48
1.29
117043--117101
26
2.3
26
87
0
82
35
0
6
57
1.25
117061--117116
26
2.2
26
80
6
60
28
3
8
58
1.45
117263--117338
7
10.7
7
71
18
59
26
3
26
43
1.72
117291--117324
15
2.3
15
90
5
52
29
2
26
41
1.70
117327--117380
21
2.6
21
78
0
63
18
1
29
50
1.58
117466--117555
32
2.8
32
91
0
144
62
8
1
27
1.32
119735--119773
20
1.9
21
89
5
62
53
0
2
43
1.14
120248--120302
19
2.6
22
73
21
55
70
5
1
21
1.16
120424--120494
21
3.2
20
79
16
63
70
1
0
28
0.96
120535--120607
28
2.7
29
76
18
75
64
6
0
28
1.19
120568--120608
21
1.9
22
90
5
66
68
7
0
24
1.15
122720--122858
63
2.2
66
92
3
230
49
3
0
46
1.19
122714--122875
66
2.6
60
79
13
193
50
3
0
46
1.17
123556--123593
13
2.8
13
96
4
67
39
18
0
42
1.50
123571--123623
26
2.0
26
81
0
61
47
16
0
35
1.48
128132--128179
16
3.0
16
75
0
51
41
22
12
22
1.88
128314--128430
58
2.0
58
96
0
216
29
12
16
41
1.85
131190--131218
2
14.5
2
100
0
58
51
0
0
48
1.00
133860--133890
16
1.9
16
93
0
53
54
0
3
41
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
134214--134267
27
2.0
27
82
13
67
48
1
5
44
1.37
135273--135312
20
2.0
20
90
0
62
45
15
7
32
1.74
138844--138868
12
2.1
12
100
0
50
0
8
0
92
0.40
143995--144049
21
2.7
21
71
2
58
29
27
10
32
1.91
145280--145327
13
3.3
13
75
25
51
31
18
18
31
1.95
147608--147659
21
2.4
22
90
3
79
7
5
23
63
1.43
147624--147674
17
2.8
17
85
11
57
5
3
19
70
1.24
149361--149397
17
2.1
19
90
10
60
62
8
8
21
1.49
149415--149455
21
2.0
22
85
9
59
60
4
2
31
1.30
149966--149990
10
2.5
10
100
0
50
72
8
0
20
1.10
151029--151100
35
2.1
35
100
0
144
41
11
11
36
1.76
153588--153638
26
2.0
26
88
0
75
50
1
0
47
1.12
163856--163914
21
2.9
21
73
14
52
64
3
1
30
1.20
165855--165928
32
2.4
32
79
4
80
37
10
16
35
1.83
174541--174683
76
1.9
75
89
1
223
32
7
20
38
1.82
179844--179948
52
2.0
52
100
0
210
38
3
13
44
1.62

Tables:   1

The End!