Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008031.1 Kokia drynarioides strain JFW-HI SEQ_122686, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9258
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.34


Found at i:1086 original size:48 final size:48

Alignment explanation


    Indices: 1015--1116  Score: 195
    Period size: 48  Copynumber: 2.1  Consensus size: 48

       1005 TAATCGTTCT

                                                            
       1015 GTTCTTCCCTATCCTGTATCATGTTCAGATTAAGAGGGACCTATAATA
          1 GTTCTTCCCTATCCTGTATCATGTTCAGATTAAGAGGGACCTATAATA

                             *                              
       1063 GTTCTTCCCTATCCTGTTTCATGTTCAGATTAAGAGGGACCTATAATA
          1 GTTCTTCCCTATCCTGTATCATGTTCAGATTAAGAGGGACCTATAATA

                  
       1111 GTTCTT
          1 GTTCTT

       1117 TTTATACAAC


Statistics
Matches: 53,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  48   53  1.00

ACGTcount: A:0.25, C:0.21, G:0.17, T:0.38


Consensus pattern (48 bp):   
GTTCTTCCCTATCCTGTATCATGTTCAGATTAAGAGGGACCTATAATA

Found at i:6823 original size:69 final size:69

Alignment explanation


    Indices: 6712--6853  Score: 284
    Period size: 69  Copynumber: 2.1  Consensus size: 69

       6702 AGGATAACTT

                                                                             
       6712 GGCGCCGGAGGAGGAGGTTGGTGGTGGTGGTGGTAGATGGCATTCGGATAGTTTGAGTTAGGGGC
          1 GGCGCCGGAGGAGGAGGTTGGTGGTGGTGGTGGTAGATGGCATTCGGATAGTTTGAGTTAGGGGC

                
       6777 TTGG
         66 TTGG

                                                                             
       6781 GGCGCCGGAGGAGGAGGTTGGTGGTGGTGGTGGTAGATGGCATTCGGATAGTTTGAGTTAGGGGC
          1 GGCGCCGGAGGAGGAGGTTGGTGGTGGTGGTGGTAGATGGCATTCGGATAGTTTGAGTTAGGGGC

                
       6846 TTGG
         66 TTGG

                
       6850 GGCG
          1 GGCG

       6854 TCGGCCACCC


Statistics
Matches: 73,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  69   73  1.00

ACGTcount: A:0.14, C:0.09, G:0.51, T:0.25


Consensus pattern (69 bp):   
GGCGCCGGAGGAGGAGGTTGGTGGTGGTGGTGGTAGATGGCATTCGGATAGTTTGAGTTAGGGGC
TTGG
Done.