Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008039.1 Kokia drynarioides strain JFW-HI SEQ_122695, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 908

Length: 1514
ACGTcount: A:0.36, C:0.11, G:0.13, T:0.40


Found at i:828 original size:27 final size:27

Alignment explanation


    Indices: 774--830  Score: 80
    Period size: 28  Copynumber: 2.1  Consensus size: 27

        764 CATTTTTAAA

                                        
        774 TTCAAAATATTAATAAAAAGTTTAAAAT
          1 TTCAAAATATTAATAAAAAG-TTAAAAT

                                   *    
        802 TTCAAAATATTAATTAAAAA-TTCAAAT
          1 TTCAAAATATTAA-TAAAAAGTTAAAAT

              
        829 TT
          1 TT

        831 TATATTTTTT


Statistics
Matches: 27,  Mismatches: 1, Indels: 3
        0.87            0.03        0.10

Matches are distributed among these distances:
  27    8  0.30
  28   13  0.48
  29    6  0.22

ACGTcount: A:0.54, C:0.05, G:0.02, T:0.39


Consensus pattern (27 bp):   
TTCAAAATATTAATAAAAAGTTAAAAT

Found at i:859 original size:18 final size:18

Alignment explanation


    Indices: 836--871  Score: 63
    Period size: 18  Copynumber: 2.0  Consensus size: 18

        826 AATTTTATAT

                              
        836 TTTTTTAAAAAATATAAA
          1 TTTTTTAAAAAATATAAA

                       *      
        854 TTTTTTAAAAATTATAAA
          1 TTTTTTAAAAAATATAAA

        872 AAATATTTAA


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  18   17  1.00

ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47


Consensus pattern (18 bp):   
TTTTTTAAAAAATATAAA
Done.