Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008040.1 Kokia drynarioides strain JFW-HI SEQ_122696, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 26001
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.34


Found at i:7016 original size:29 final size:29

Alignment explanation


    Indices: 6973--7030  Score: 98
    Period size: 29  Copynumber: 2.0  Consensus size: 29

       6963 CAAGAAAGAT

                      *                  
       6973 CTTTTAAAACCAGCCTAAATTTTAAGTAC
          1 CTTTTAAAACAAGCCTAAATTTTAAGTAC

                            *            
       7002 CTTTTAAAACAAGCCTTAATTTTAAGTAC
          1 CTTTTAAAACAAGCCTAAATTTTAAGTAC

       7031 TTATTTGTTC


Statistics
Matches: 27,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  29   27  1.00

ACGTcount: A:0.38, C:0.19, G:0.07, T:0.36


Consensus pattern (29 bp):   
CTTTTAAAACAAGCCTAAATTTTAAGTAC
Done.