Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008041.1 Kokia drynarioides strain JFW-HI SEQ_122697, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13144
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.34

Warning! 10 characters in sequence are not A, C, G, or T


Found at i:8274 original size:27 final size:27

Alignment explanation


    Indices: 8216--8268  Score: 72
    Period size: 27  Copynumber: 2.0  Consensus size: 27

       8206 TAAAATTTAA

                *                      
       8216 ATAAGTATATAAATTAAATAAAATAGC
          1 ATAATTATATAAATTAAATAAAATAGC

                                  *    
       8243 ATAATTATA-AAATATAAATAATATAG
          1 ATAATTATATAAAT-TAAATAAAATAG

       8269 TTTAATATGA


Statistics
Matches: 23,  Mismatches: 2, Indels: 2
        0.85            0.07        0.07

Matches are distributed among these distances:
  26    4  0.17
  27   19  0.83

ACGTcount: A:0.60, C:0.02, G:0.06, T:0.32


Consensus pattern (27 bp):   
ATAATTATATAAATTAAATAAAATAGC

Found at i:9398 original size:21 final size:21

Alignment explanation


    Indices: 9352--9399  Score: 55
    Period size: 21  Copynumber: 2.3  Consensus size: 21

       9342 ATTTTAACCT

                           *     
       9352 TTTTTTATATTTTCTTTAGAA
          1 TTTTTTATATTTTCTATAGAA

                                  
       9373 TTTTTTATAATTTT-TATA-AA
          1 TTTTTTAT-ATTTTCTATAGAA

             *     
       9393 TATTTTA
          1 TTTTTTA

       9400 AATATTGAAA


Statistics
Matches: 24,  Mismatches: 2, Indels: 3
        0.83            0.07        0.10

Matches are distributed among these distances:
  20    8  0.33
  21   11  0.46
  22    5  0.21

ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67


Consensus pattern (21 bp):   
TTTTTTATATTTTCTATAGAA
Done.