Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008048.1 Kokia drynarioides strain JFW-HI SEQ_122704, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4018
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33


Found at i:1916 original size:17 final size:16

Alignment explanation


    Indices: 1890--1923  Score: 50
    Period size: 17  Copynumber: 2.1  Consensus size: 16

       1880 GATTGGGTCA

                            
       1890 AAATTAAATGCATGTG
          1 AAATTAAATGCATGTG

                       *     
       1906 AAATATAAATGGATGTG
          1 AAAT-TAAATGCATGTG

             
       1923 A
          1 A

       1924 CATAGTAGAA


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  16    4  0.25
  17   12  0.75

ACGTcount: A:0.47, C:0.03, G:0.21, T:0.29


Consensus pattern (16 bp):   
AAATTAAATGCATGTG
Done.